Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.6■□□□□ 0.57
COL4A4P53420 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A4P53420 AC015911.4-201ENST00000588022 1070 ntBASIC18.6■□□□□ 0.57
COL4A4P53420 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A4P53420 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A4P53420 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A4P53420 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A4P53420 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.59■□□□□ 0.57
COL4A4P53420 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A4P53420 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
COL4A4P53420 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A4P53420 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A4P53420 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.59■□□□□ 0.57
COL4A4P53420 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A4P53420 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A4P53420 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
COL4A4P53420 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A4P53420 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A4P53420 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.59■□□□□ 0.57
COL4A4P53420 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
COL4A4P53420 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A4P53420 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
COL4A4P53420 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
COL4A4P53420 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.59■□□□□ 0.57
COL4A4P53420 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
COL4A4P53420 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.59■□□□□ 0.57
COL4A4P53420 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A4P53420 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A4P53420 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL4A4P53420 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A4P53420 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.58■□□□□ 0.57
COL4A4P53420 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.58■□□□□ 0.57
COL4A4P53420 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.58■□□□□ 0.57
COL4A4P53420 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A4P53420 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A4P53420 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A4P53420 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A4P53420 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A4P53420 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A4P53420 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A4P53420 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL4A4P53420 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.57
COL4A4P53420 AC025678.2-201ENST00000562061 970 ntBASIC18.58■□□□□ 0.57
COL4A4P53420 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.58■□□□□ 0.57
COL4A4P53420 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.58■□□□□ 0.57
COL4A4P53420 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.58■□□□□ 0.57
COL4A4P53420 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.58■□□□□ 0.56
COL4A4P53420 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.58■□□□□ 0.56
COL4A4P53420 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
COL4A4P53420 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.58■□□□□ 0.56
COL4A4P53420 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.58■□□□□ 0.56
COL4A4P53420 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 AC009949.1-201ENST00000623048 1830 ntBASIC18.58■□□□□ 0.56
COL4A4P53420 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL4A4P53420 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A4P53420 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A4P53420 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.57■□□□□ 0.56
COL4A4P53420 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
COL4A4P53420 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.57■□□□□ 0.56
COL4A4P53420 UGT1A2P-201ENST00000454886 866 ntBASIC18.57■□□□□ 0.56
COL4A4P53420 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.57■□□□□ 0.56
COL4A4P53420 STK19B-204ENST00000512515 211 ntBASIC18.57■□□□□ 0.56
COL4A4P53420 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.57■□□□□ 0.56
COL4A4P53420 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.57■□□□□ 0.56
COL4A4P53420 AC051619.7-201ENST00000568314 623 ntBASIC18.57■□□□□ 0.56
COL4A4P53420 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A4P53420 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
COL4A4P53420 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL4A4P53420 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A4P53420 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.57■□□□□ 0.56
COL4A4P53420 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.57■□□□□ 0.56
COL4A4P53420 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A4P53420 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.57■□□□□ 0.56
COL4A4P53420 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL4A4P53420 NOC2LP2-201ENST00000407594 1944 ntBASIC18.57■□□□□ 0.56
COL4A4P53420 AL049757.1-201ENST00000616842 1596 ntBASIC18.57■□□□□ 0.56
COL4A4P53420 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.57■□□□□ 0.56
COL4A4P53420 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.57■□□□□ 0.56
COL4A4P53420 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.57■□□□□ 0.56
COL4A4P53420 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.57■□□□□ 0.56
COL4A4P53420 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
COL4A4P53420 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A4P53420 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A4P53420 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL4A4P53420 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A4P53420 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.56■□□□□ 0.56
COL4A4P53420 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.56■□□□□ 0.56
COL4A4P53420 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL4A4P53420 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms