Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC24.05■■□□□ 1.44
MSH6P52701 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC24.05■■□□□ 1.44
MSH6P52701 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
MSH6P52701 CALY-202ENST00000368555 783 ntTSL 2 BASIC24.04■■□□□ 1.44
MSH6P52701 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
MSH6P52701 U91328.1-201ENST00000437528 223 ntBASIC24.04■■□□□ 1.44
MSH6P52701 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC24.04■■□□□ 1.44
MSH6P52701 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC24.04■■□□□ 1.44
MSH6P52701 AC084121.4-201ENST00000641598 221 ntBASIC24.04■■□□□ 1.44
MSH6P52701 AF228730.8-201ENST00000642140 221 ntBASIC24.04■■□□□ 1.44
MSH6P52701 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
MSH6P52701 CU639417.3-201ENST00000624240 1404 ntBASIC24.04■■□□□ 1.44
MSH6P52701 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
MSH6P52701 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC24.04■■□□□ 1.44
MSH6P52701 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
MSH6P52701 UXT-AS1-201ENST00000590504 1525 ntBASIC24.04■■□□□ 1.44
MSH6P52701 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC24.04■■□□□ 1.44
MSH6P52701 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
MSH6P52701 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
MSH6P52701 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
MSH6P52701 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC24.04■■□□□ 1.44
MSH6P52701 HARS-203ENST00000431330 1774 ntTSL 2 BASIC24.04■■□□□ 1.44
MSH6P52701 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
MSH6P52701 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
MSH6P52701 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
MSH6P52701 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC24.03■■□□□ 1.44
MSH6P52701 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC24.03■■□□□ 1.44
MSH6P52701 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC24.03■■□□□ 1.44
MSH6P52701 AC002558.1-201ENST00000488906 803 ntBASIC24.03■■□□□ 1.44
MSH6P52701 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC24.03■■□□□ 1.44
MSH6P52701 GATD1-206ENST00000526325 756 ntTSL 5 BASIC24.03■■□□□ 1.44
MSH6P52701 LINC01225-203ENST00000563550 1244 ntBASIC24.03■■□□□ 1.44
MSH6P52701 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC24.03■■□□□ 1.44
MSH6P52701 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC24.03■■□□□ 1.44
MSH6P52701 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC24.03■■□□□ 1.44
MSH6P52701 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC24.03■■□□□ 1.44
MSH6P52701 HARS-201ENST00000307633 1780 ntTSL 2 BASIC24.03■■□□□ 1.44
MSH6P52701 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
MSH6P52701 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC24.03■■□□□ 1.44
MSH6P52701 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
MSH6P52701 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 MYCLP1-201ENST00000372451 1075 ntBASIC24.03■■□□□ 1.44
MSH6P52701 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
MSH6P52701 AC241585.1-201ENST00000433527 519 ntBASIC24.03■■□□□ 1.44
MSH6P52701 IGHV3-71-201ENST00000523324 359 ntBASIC24.03■■□□□ 1.44
MSH6P52701 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
MSH6P52701 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC24.03■■□□□ 1.44
MSH6P52701 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 FLYWCH1P1-201ENST00000460917 1874 ntBASIC24.02■■□□□ 1.44
MSH6P52701 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC24.02■■□□□ 1.44
MSH6P52701 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
MSH6P52701 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC24.02■■□□□ 1.44
MSH6P52701 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 GPR53P-205ENST00000457298 1084 ntBASIC24.02■■□□□ 1.44
MSH6P52701 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC24.02■■□□□ 1.44
MSH6P52701 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 AL161645.1-201ENST00000622716 1255 ntBASIC24.02■■□□□ 1.44
MSH6P52701 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH6P52701 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC24.02■■□□□ 1.43
MSH6P52701 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
MSH6P52701 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
MSH6P52701 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC24.01■■□□□ 1.43
MSH6P52701 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
MSH6P52701 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC24.01■■□□□ 1.43
MSH6P52701 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
MSH6P52701 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC24.01■■□□□ 1.43
MSH6P52701 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC24.01■■□□□ 1.43
MSH6P52701 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
MSH6P52701 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC24.01■■□□□ 1.43
MSH6P52701 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
MSH6P52701 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC24.01■■□□□ 1.43
MSH6P52701 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC24.01■■□□□ 1.43
MSH6P52701 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
MSH6P52701 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC24.01■■□□□ 1.43
MSH6P52701 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
MSH6P52701 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
MSH6P52701 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC24.01■■□□□ 1.43
MSH6P52701 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
MSH6P52701 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
MSH6P52701 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC24.01■■□□□ 1.43
MSH6P52701 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC24.01■■□□□ 1.43
MSH6P52701 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
MSH6P52701 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms