Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.05■□□□□ 0.8
SMARCA1P28370 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.05■□□□□ 0.8
SMARCA1P28370 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.04■□□□□ 0.8
SMARCA1P28370 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SMARCA1P28370 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.04■□□□□ 0.8
SMARCA1P28370 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SMARCA1P28370 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.04■□□□□ 0.8
SMARCA1P28370 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SMARCA1P28370 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.04■□□□□ 0.8
SMARCA1P28370 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.04■□□□□ 0.8
SMARCA1P28370 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.04■□□□□ 0.8
SMARCA1P28370 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.04■□□□□ 0.8
SMARCA1P28370 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SMARCA1P28370 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.04■□□□□ 0.8
SMARCA1P28370 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SMARCA1P28370 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.04■□□□□ 0.8
SMARCA1P28370 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCA1P28370 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
SMARCA1P28370 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
SMARCA1P28370 AC116353.5-201ENST00000638148 1699 ntBASIC20.03■□□□□ 0.8
SMARCA1P28370 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCA1P28370 AL590787.1-201ENST00000568856 1315 ntBASIC20.03■□□□□ 0.8
SMARCA1P28370 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SMARCA1P28370 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCA1P28370 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCA1P28370 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SMARCA1P28370 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.03■□□□□ 0.8
SMARCA1P28370 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.03■□□□□ 0.8
SMARCA1P28370 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.03■□□□□ 0.8
SMARCA1P28370 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.03■□□□□ 0.8
SMARCA1P28370 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
SMARCA1P28370 AL049840.3-201ENST00000602669 611 ntBASIC20.03■□□□□ 0.8
SMARCA1P28370 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.03■□□□□ 0.8
SMARCA1P28370 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.03■□□□□ 0.8
SMARCA1P28370 AC116407.3-201ENST00000623905 1129 ntBASIC20.03■□□□□ 0.8
SMARCA1P28370 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.03■□□□□ 0.8
SMARCA1P28370 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCA1P28370 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCA1P28370 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.03■□□□□ 0.8
SMARCA1P28370 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCA1P28370 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCA1P28370 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCA1P28370 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCA1P28370 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCA1P28370 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
SMARCA1P28370 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCA1P28370 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCA1P28370 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
SMARCA1P28370 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.02■□□□□ 0.8
SMARCA1P28370 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCA1P28370 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SMARCA1P28370 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.02■□□□□ 0.8
SMARCA1P28370 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.02■□□□□ 0.8
SMARCA1P28370 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.02■□□□□ 0.8
SMARCA1P28370 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.02■□□□□ 0.8
SMARCA1P28370 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.02■□□□□ 0.8
SMARCA1P28370 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
SMARCA1P28370 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.02■□□□□ 0.8
SMARCA1P28370 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCA1P28370 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SMARCA1P28370 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCA1P28370 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCA1P28370 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
SMARCA1P28370 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SMARCA1P28370 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.02■□□□□ 0.79
SMARCA1P28370 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMARCA1P28370 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SMARCA1P28370 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMARCA1P28370 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMARCA1P28370 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA1P28370 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SMARCA1P28370 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SMARCA1P28370 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA1P28370 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.01■□□□□ 0.79
SMARCA1P28370 AC136632.2-201ENST00000512891 861 ntBASIC20.01■□□□□ 0.79
SMARCA1P28370 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
SMARCA1P28370 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.01■□□□□ 0.79
SMARCA1P28370 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
SMARCA1P28370 BX640515.1-201ENST00000617215 977 ntBASIC20.01■□□□□ 0.79
SMARCA1P28370 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA1P28370 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.01■□□□□ 0.79
SMARCA1P28370 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.01■□□□□ 0.79
SMARCA1P28370 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA1P28370 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SMARCA1P28370 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA1P28370 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA1P28370 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms