Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
USF1P22415 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
USF1P22415 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
USF1P22415 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
USF1P22415 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.87□□□□□ -0.03
USF1P22415 AC098831.1-202ENST00000438821 336 ntBASIC14.87□□□□□ -0.03
USF1P22415 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
USF1P22415 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC14.87□□□□□ -0.03
USF1P22415 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC14.87□□□□□ -0.03
USF1P22415 NKAPP1-205ENST00000585790 367 ntBASIC14.87□□□□□ -0.03
USF1P22415 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
USF1P22415 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.87□□□□□ -0.03
USF1P22415 MTDHP4-201ENST00000600287 670 ntBASIC14.87□□□□□ -0.03
USF1P22415 AC025062.2-201ENST00000605477 670 ntBASIC14.87□□□□□ -0.03
USF1P22415 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
USF1P22415 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
USF1P22415 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
USF1P22415 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.87□□□□□ -0.03
USF1P22415 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
USF1P22415 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC14.87□□□□□ -0.03
USF1P22415 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.87□□□□□ -0.03
USF1P22415 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC14.87□□□□□ -0.03
USF1P22415 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC14.87□□□□□ -0.03
USF1P22415 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
USF1P22415 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC14.86□□□□□ -0.03
USF1P22415 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC14.86□□□□□ -0.03
USF1P22415 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC14.86□□□□□ -0.03
USF1P22415 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 GMCL1P1-201ENST00000463439 1581 ntBASIC14.86□□□□□ -0.03
USF1P22415 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC14.86□□□□□ -0.03
USF1P22415 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC14.86□□□□□ -0.03
USF1P22415 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
USF1P22415 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.86□□□□□ -0.03
USF1P22415 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC14.86□□□□□ -0.03
USF1P22415 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC14.86□□□□□ -0.03
USF1P22415 AC105339.3-201ENST00000560043 636 ntBASIC14.86□□□□□ -0.03
USF1P22415 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 AC140113.2-201ENST00000604370 208 ntBASIC14.86□□□□□ -0.03
USF1P22415 Z83851.2-201ENST00000609564 659 ntBASIC14.86□□□□□ -0.03
USF1P22415 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.86□□□□□ -0.03
USF1P22415 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.86□□□□□ -0.03
USF1P22415 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC14.86□□□□□ -0.03
USF1P22415 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
USF1P22415 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
USF1P22415 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
USF1P22415 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
USF1P22415 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
USF1P22415 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
USF1P22415 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC14.85□□□□□ -0.03
USF1P22415 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.85□□□□□ -0.03
USF1P22415 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
USF1P22415 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
USF1P22415 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.85□□□□□ -0.03
USF1P22415 RNA5SP415-201ENST00000517246 115 ntBASIC14.85□□□□□ -0.03
USF1P22415 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
USF1P22415 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.85□□□□□ -0.03
USF1P22415 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC14.85□□□□□ -0.03
USF1P22415 AL356488.2-201ENST00000602755 427 ntBASIC14.85□□□□□ -0.03
USF1P22415 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
USF1P22415 AC107918.4-202ENST00000641623 219 ntBASIC14.85□□□□□ -0.03
USF1P22415 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
USF1P22415 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
USF1P22415 AL133373.2-201ENST00000623187 2828 ntBASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms