Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 AC135776.1-201ENST00000319817 2481 ntBASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 AC020763.4-201ENST00000623414 4170 ntBASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSB-PGBD3P0DP91 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 HNRNPFP1-201ENST00000391730 1133 ntBASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 NABP1-203ENST00000409510 843 ntTSL 5 BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 ACTL9-202ENST00000612068 1252 ntBASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CSB-PGBD3P0DP91 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
CSB-PGBD3P0DP91 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
CSB-PGBD3P0DP91 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
CSB-PGBD3P0DP91 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC23.08■■□□□ 1.28
CSB-PGBD3P0DP91 AL020996.1-203ENST00000536896 2307 ntBASIC23.08■■□□□ 1.28
CSB-PGBD3P0DP91 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC23.08■■□□□ 1.28
CSB-PGBD3P0DP91 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC23.08■■□□□ 1.28
CSB-PGBD3P0DP91 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CSB-PGBD3P0DP91 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 NMU-203ENST00000507338 658 ntTSL 3 BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 IGHV3OR16-6-201ENST00000568775 360 ntBASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 MIR4745-201ENST00000577608 62 ntBASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 INO80C-206ENST00000586489 594 ntTSL 3 BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC23.07■■□□□ 1.28
CSB-PGBD3P0DP91 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 DUT-210ENST00000559935 569 ntTSL 3 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC23.06■■□□□ 1.28
CSB-PGBD3P0DP91 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms