Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.24■□□□□ 0.99
COL4A1P02462 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A1P02462 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC21.24■□□□□ 0.99
COL4A1P02462 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A1P02462 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A1P02462 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.24■□□□□ 0.99
COL4A1P02462 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
COL4A1P02462 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A1P02462 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
COL4A1P02462 AL645939.2-201ENST00000427340 991 ntBASIC21.24■□□□□ 0.99
COL4A1P02462 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.24■□□□□ 0.99
COL4A1P02462 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC21.24■□□□□ 0.99
COL4A1P02462 KRT8P48-201ENST00000515599 1220 ntBASIC21.24■□□□□ 0.99
COL4A1P02462 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A1P02462 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC21.24■□□□□ 0.99
COL4A1P02462 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC21.24■□□□□ 0.99
COL4A1P02462 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC21.24■□□□□ 0.99
COL4A1P02462 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A1P02462 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.23■□□□□ 0.99
COL4A1P02462 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC21.23■□□□□ 0.99
COL4A1P02462 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
COL4A1P02462 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC21.23■□□□□ 0.99
COL4A1P02462 AC005498.2-205ENST00000593218 784 ntBASIC21.23■□□□□ 0.99
COL4A1P02462 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC21.23■□□□□ 0.99
COL4A1P02462 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
COL4A1P02462 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
COL4A1P02462 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL4A1P02462 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
COL4A1P02462 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC21.22■□□□□ 0.99
COL4A1P02462 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC21.22■□□□□ 0.99
COL4A1P02462 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 AC093512.1-201ENST00000617969 520 ntBASIC21.22■□□□□ 0.99
COL4A1P02462 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
COL4A1P02462 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL4A1P02462 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.22■□□□□ 0.99
COL4A1P02462 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC21.22■□□□□ 0.99
COL4A1P02462 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.21■□□□□ 0.99
COL4A1P02462 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A1P02462 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A1P02462 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.21■□□□□ 0.99
COL4A1P02462 AL355306.1-201ENST00000415580 579 ntBASIC21.21■□□□□ 0.99
COL4A1P02462 FAM185BP-201ENST00000443595 716 ntBASIC21.21■□□□□ 0.99
COL4A1P02462 AC023141.5-201ENST00000458585 616 ntBASIC21.21■□□□□ 0.99
COL4A1P02462 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC21.21■□□□□ 0.99
COL4A1P02462 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.21■□□□□ 0.99
COL4A1P02462 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC21.21■□□□□ 0.99
COL4A1P02462 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A1P02462 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.21■□□□□ 0.99
COL4A1P02462 AC007064.4-201ENST00000637740 555 ntBASIC21.21■□□□□ 0.99
COL4A1P02462 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC21.21■□□□□ 0.99
COL4A1P02462 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A1P02462 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.21■□□□□ 0.99
COL4A1P02462 AL355312.1-201ENST00000407115 2176 ntBASIC21.21■□□□□ 0.99
COL4A1P02462 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.21■□□□□ 0.99
COL4A1P02462 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A1P02462 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
COL4A1P02462 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
COL4A1P02462 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
COL4A1P02462 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
COL4A1P02462 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COL4A1P02462 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC21.21■□□□□ 0.99
COL4A1P02462 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC21.21■□□□□ 0.99
COL4A1P02462 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC21.21■□□□□ 0.99
COL4A1P02462 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC21.21■□□□□ 0.99
COL4A1P02462 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC21.21■□□□□ 0.99
COL4A1P02462 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A1P02462 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A1P02462 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
COL4A1P02462 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL4A1P02462 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC21.2■□□□□ 0.98
COL4A1P02462 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL4A1P02462 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms