Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.64■□□□□ 0.73
MSH4O15457 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.64■□□□□ 0.73
MSH4O15457 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
MSH4O15457 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.64■□□□□ 0.73
MSH4O15457 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.64■□□□□ 0.73
MSH4O15457 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.64■□□□□ 0.73
MSH4O15457 AC008735.5-201ENST00000623544 497 ntBASIC19.64■□□□□ 0.73
MSH4O15457 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
MSH4O15457 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MSH4O15457 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
MSH4O15457 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.63■□□□□ 0.73
MSH4O15457 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.63■□□□□ 0.73
MSH4O15457 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.63■□□□□ 0.73
MSH4O15457 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.63■□□□□ 0.73
MSH4O15457 AC139887.3-201ENST00000568585 713 ntBASIC19.63■□□□□ 0.73
MSH4O15457 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.63■□□□□ 0.73
MSH4O15457 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
MSH4O15457 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MSH4O15457 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
MSH4O15457 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
MSH4O15457 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.62■□□□□ 0.73
MSH4O15457 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
MSH4O15457 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 NCF1C-201ENST00000438382 1427 ntBASIC19.62■□□□□ 0.73
MSH4O15457 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 RPS2P28-201ENST00000314255 741 ntBASIC19.62■□□□□ 0.73
MSH4O15457 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.62■□□□□ 0.73
MSH4O15457 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.62■□□□□ 0.73
MSH4O15457 KRT18P27-201ENST00000427733 1299 ntBASIC19.62■□□□□ 0.73
MSH4O15457 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.62■□□□□ 0.73
MSH4O15457 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.62■□□□□ 0.73
MSH4O15457 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.62■□□□□ 0.73
MSH4O15457 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.62■□□□□ 0.73
MSH4O15457 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
MSH4O15457 AC004706.3-202ENST00000621574 984 ntBASIC19.62■□□□□ 0.73
MSH4O15457 AC116407.3-201ENST00000623905 1129 ntBASIC19.62■□□□□ 0.73
MSH4O15457 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.62■□□□□ 0.73
MSH4O15457 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
MSH4O15457 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
MSH4O15457 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
MSH4O15457 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.62■□□□□ 0.73
MSH4O15457 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
MSH4O15457 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MSH4O15457 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
MSH4O15457 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
MSH4O15457 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
MSH4O15457 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 AP002414.3-201ENST00000589352 1468 ntBASIC19.61■□□□□ 0.73
MSH4O15457 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.61■□□□□ 0.73
MSH4O15457 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
MSH4O15457 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.61■□□□□ 0.73
MSH4O15457 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MSH4O15457 AC073621.1-201ENST00000392730 636 ntBASIC19.61■□□□□ 0.73
MSH4O15457 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.61■□□□□ 0.73
MSH4O15457 LINC00982-205ENST00000420957 435 ntBASIC19.61■□□□□ 0.73
MSH4O15457 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.61■□□□□ 0.73
MSH4O15457 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.61■□□□□ 0.73
MSH4O15457 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
MSH4O15457 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.61■□□□□ 0.73
MSH4O15457 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.61■□□□□ 0.73
MSH4O15457 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.61■□□□□ 0.73
MSH4O15457 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms