Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA3Q9Y5H0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 ABCD1P5-201ENST00000445663 754 ntBASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 AL049840.3-201ENST00000602669 611 ntBASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 ZNF259P1-201ENST00000407656 1365 ntBASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA3Q9Y5H0 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 LINC00602-201ENST00000629776 2065 ntBASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PCDHGA3Q9Y5H0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 HNRNPDP1-201ENST00000439535 754 ntBASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 RPL13AP23-201ENST00000480739 586 ntBASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.08■□□□□ 0.32
PCDHGA3Q9Y5H0 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.07■□□□□ 0.32
PCDHGA3Q9Y5H0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms