Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 PIN1P1-201ENST00000412108 996 ntBASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 SPDYE7P-202ENST00000420373 878 ntBASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 TREML5P-201ENST00000421694 576 ntBASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 FAM58DP-201ENST00000428076 619 ntBASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 AC140658.5-201ENST00000438532 169 ntBASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 ATP5G2P4-201ENST00000442175 420 ntBASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.11■□□□□ 0.97
ZC3H4Q9UPT8 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 AKAP8P1-201ENST00000434743 1349 ntBASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 STK19B-204ENST00000512515 211 ntBASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 AL662799.1-202ENST00000614205 422 ntBASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
ZC3H4Q9UPT8 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 AL512638.1-201ENST00000457493 794 ntBASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 RN7SL692P-201ENST00000464677 288 ntBASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 IGHV3-42-201ENST00000520410 361 ntBASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 GMCL1P1-201ENST00000463439 1581 ntBASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
ZC3H4Q9UPT8 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 ARSEP1-201ENST00000420443 635 ntBASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
ZC3H4Q9UPT8 AC009336.1-201ENST00000608941 1553 ntBASIC21.08■□□□□ 0.96
ZC3H4Q9UPT8 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZC3H4Q9UPT8 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
ZC3H4Q9UPT8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZC3H4Q9UPT8 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
ZC3H4Q9UPT8 AC093503.3-201ENST00000624917 2352 ntBASIC21.08■□□□□ 0.96
ZC3H4Q9UPT8 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
ZC3H4Q9UPT8 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
ZC3H4Q9UPT8 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms