Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 AC007663.1-201ENST00000438948 1240 ntBASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 FITM1-202ENST00000559294 800 ntBASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 AC008687.5-201ENST00000593746 558 ntBASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 GXYLT1P6-201ENST00000456472 1187 ntBASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHMP1AQ9HD42 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 AC128688.1-201ENST00000487626 519 ntBASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 AC008550.1-201ENST00000511500 884 ntBASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 AC024243.1-201ENST00000609234 778 ntBASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 AC010653.2-201ENST00000623505 997 ntBASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC15.14■□□□□ 0.01
CHMP1AQ9HD42 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms