Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 UBE2SP1-201ENST00000450587 669 ntBASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 ITM2C-210ENST00000620962 501 ntBASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28BQ9BUN5 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 AC009947.2-201ENST00000444014 672 ntBASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 C2orf69P3-201ENST00000565542 1120 ntBASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 AC026691.1-201ENST00000602502 2017 ntBASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28BQ9BUN5 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28BQ9BUN5 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28BQ9BUN5 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28BQ9BUN5 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CCDC28BQ9BUN5 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28BQ9BUN5 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28BQ9BUN5 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28BQ9BUN5 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28BQ9BUN5 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 AC022188.1-201ENST00000620960 1664 ntBASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 KRT89P-201ENST00000620027 1478 ntBASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CCDC28BQ9BUN5 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 LINC02012-201ENST00000608206 1725 ntBASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms