Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 AC023141.13-201ENST00000604991 943 ntBASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 AC092902.6-201ENST00000641783 218 ntBASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USHBP1Q8N6Y0 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 MYCLP1-201ENST00000372451 1075 ntBASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 CXCL1P1-201ENST00000502804 216 ntBASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
USHBP1Q8N6Y0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 ACTG1P4-201ENST00000425123 1122 ntBASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
USHBP1Q8N6Y0 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 AC046185.3-201ENST00000623228 1824 ntBASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 AL645939.2-201ENST00000427340 991 ntBASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC22.96■■□□□ 1.27
USHBP1Q8N6Y0 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms