Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 FEM1AP3-201ENST00000403722 1741 ntBASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 AL499627.1-201ENST00000569373 2188 ntBASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CCDC28AQ8IWP9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 TFP1-202ENST00000475455 1573 ntBASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 AC067930.6-201ENST00000623257 4947 ntBASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 CYP2T1P-201ENST00000432607 1285 ntBASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 CNN2P6-201ENST00000439038 900 ntBASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 HES2-205ENST00000487437 968 ntTSL 3 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 AC005181.1-201ENST00000604782 1256 ntBASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 AC080038.1-201ENST00000611274 1154 ntBASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC28AQ8IWP9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CCDC28AQ8IWP9 AC004911.1-201ENST00000416316 871 ntBASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms