Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 MIR5100-201ENST00000579544 119 ntBASIC18.95■□□□□ 0.62
KRT39Q6A163 STK25P1-201ENST00000585406 838 ntBASIC18.95■□□□□ 0.62
KRT39Q6A163 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.95■□□□□ 0.62
KRT39Q6A163 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.95■□□□□ 0.62
KRT39Q6A163 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
KRT39Q6A163 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.95■□□□□ 0.62
KRT39Q6A163 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
KRT39Q6A163 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
KRT39Q6A163 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.94■□□□□ 0.62
KRT39Q6A163 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.94■□□□□ 0.62
KRT39Q6A163 AC016396.2-201ENST00000562575 1417 ntBASIC18.94■□□□□ 0.62
KRT39Q6A163 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.94■□□□□ 0.62
KRT39Q6A163 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
KRT39Q6A163 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.94■□□□□ 0.62
KRT39Q6A163 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.94■□□□□ 0.62
KRT39Q6A163 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
KRT39Q6A163 NUS1P2-201ENST00000417358 873 ntBASIC18.94■□□□□ 0.62
KRT39Q6A163 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.94■□□□□ 0.62
KRT39Q6A163 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.94■□□□□ 0.62
KRT39Q6A163 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
KRT39Q6A163 MIR3652-201ENST00000579335 131 ntBASIC18.94■□□□□ 0.62
KRT39Q6A163 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.94■□□□□ 0.62
KRT39Q6A163 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.94■□□□□ 0.62
KRT39Q6A163 AC138894.3-201ENST00000603787 634 ntBASIC18.94■□□□□ 0.62
KRT39Q6A163 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.94■□□□□ 0.62
KRT39Q6A163 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.94■□□□□ 0.62
KRT39Q6A163 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
KRT39Q6A163 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
KRT39Q6A163 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
KRT39Q6A163 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
KRT39Q6A163 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
KRT39Q6A163 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.94■□□□□ 0.62
KRT39Q6A163 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.94■□□□□ 0.62
KRT39Q6A163 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
KRT39Q6A163 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
KRT39Q6A163 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
KRT39Q6A163 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
KRT39Q6A163 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.93■□□□□ 0.62
KRT39Q6A163 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
KRT39Q6A163 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
KRT39Q6A163 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.93■□□□□ 0.62
KRT39Q6A163 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.93■□□□□ 0.62
KRT39Q6A163 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.93■□□□□ 0.62
KRT39Q6A163 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.93■□□□□ 0.62
KRT39Q6A163 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.93■□□□□ 0.62
KRT39Q6A163 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.93■□□□□ 0.62
KRT39Q6A163 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
KRT39Q6A163 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.93■□□□□ 0.62
KRT39Q6A163 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 AC108860.2-201ENST00000562760 2183 ntBASIC18.93■□□□□ 0.62
KRT39Q6A163 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
KRT39Q6A163 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
KRT39Q6A163 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.93■□□□□ 0.62
KRT39Q6A163 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
KRT39Q6A163 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
KRT39Q6A163 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.92■□□□□ 0.62
KRT39Q6A163 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
KRT39Q6A163 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.92■□□□□ 0.62
KRT39Q6A163 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.92■□□□□ 0.62
KRT39Q6A163 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.92■□□□□ 0.62
KRT39Q6A163 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.92■□□□□ 0.62
KRT39Q6A163 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
KRT39Q6A163 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.92■□□□□ 0.62
KRT39Q6A163 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.92■□□□□ 0.62
KRT39Q6A163 KRT16P4-201ENST00000453883 522 ntBASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms