Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 COX5BP2-201ENST00000392354 334 ntBASIC21.2■□□□□ 0.98
VPS53Q5VIR6 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 AC009533.2-201ENST00000543664 586 ntBASIC21.2■□□□□ 0.98
VPS53Q5VIR6 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 TMED1-207ENST00000591695 809 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 AC114341.1-201ENST00000618070 349 ntBASIC21.2■□□□□ 0.98
VPS53Q5VIR6 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS53Q5VIR6 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 TSPY19P-201ENST00000418461 509 ntBASIC21.19■□□□□ 0.98
VPS53Q5VIR6 TSPY18P-201ENST00000441642 509 ntBASIC21.19■□□□□ 0.98
VPS53Q5VIR6 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 UNC93B7-201ENST00000509439 705 ntBASIC21.19■□□□□ 0.98
VPS53Q5VIR6 PRELID1P1-202ENST00000567272 903 ntBASIC21.19■□□□□ 0.98
VPS53Q5VIR6 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 IGHV3OR16-7-201ENST00000604106 360 ntBASIC21.19■□□□□ 0.98
VPS53Q5VIR6 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 AC116407.2-201ENST00000613639 860 ntBASIC21.19■□□□□ 0.98
VPS53Q5VIR6 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
VPS53Q5VIR6 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 LINC00304-203ENST00000565008 1864 ntBASIC21.18■□□□□ 0.98
VPS53Q5VIR6 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 MIR5100-201ENST00000579544 119 ntBASIC21.18■□□□□ 0.98
VPS53Q5VIR6 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS53Q5VIR6 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 KRT18P31-201ENST00000506277 1292 ntBASIC21.17■□□□□ 0.98
VPS53Q5VIR6 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 AC141586.5-201ENST00000624546 2050 ntBASIC21.17■□□□□ 0.98
VPS53Q5VIR6 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS53Q5VIR6 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms