Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A4P53420 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL4A4P53420 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
COL4A4P53420 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
COL4A4P53420 AC015922.1-201ENST00000421102 1152 ntBASIC18.63■□□□□ 0.57
COL4A4P53420 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
COL4A4P53420 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 AC005225.4-201ENST00000557330 545 ntBASIC18.63■□□□□ 0.57
COL4A4P53420 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A4P53420 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A4P53420 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A4P53420 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A4P53420 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A4P53420 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A4P53420 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL4A4P53420 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A4P53420 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A4P53420 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.62■□□□□ 0.57
COL4A4P53420 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A4P53420 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A4P53420 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A4P53420 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A4P53420 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.62■□□□□ 0.57
COL4A4P53420 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A4P53420 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A4P53420 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.62■□□□□ 0.57
COL4A4P53420 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A4P53420 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A4P53420 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.62■□□□□ 0.57
COL4A4P53420 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL4A4P53420 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A4P53420 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL4A4P53420 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL4A4P53420 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A4P53420 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
COL4A4P53420 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.61■□□□□ 0.57
COL4A4P53420 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A4P53420 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A4P53420 MEIS3P1-201ENST00000495167 958 ntBASIC18.61■□□□□ 0.57
COL4A4P53420 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.61■□□□□ 0.57
COL4A4P53420 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.61■□□□□ 0.57
COL4A4P53420 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 AL353135.1-201ENST00000606729 504 ntBASIC18.61■□□□□ 0.57
COL4A4P53420 GGTLC5P-201ENST00000617623 998 ntBASIC18.61■□□□□ 0.57
COL4A4P53420 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.61■□□□□ 0.57
COL4A4P53420 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.61■□□□□ 0.57
COL4A4P53420 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
COL4A4P53420 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A4P53420 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.61■□□□□ 0.57
COL4A4P53420 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL4A4P53420 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
COL4A4P53420 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL4A4P53420 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL4A4P53420 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.61■□□□□ 0.57
COL4A4P53420 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 AC002472.2-201ENST00000442739 958 ntBASIC18.6■□□□□ 0.57
COL4A4P53420 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A4P53420 TIMM8BP1-201ENST00000452384 211 ntBASIC18.6■□□□□ 0.57
COL4A4P53420 AC074386.1-202ENST00000463561 864 ntBASIC18.6■□□□□ 0.57
COL4A4P53420 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
COL4A4P53420 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.6■□□□□ 0.57
COL4A4P53420 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.6■□□□□ 0.57
COL4A4P53420 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
COL4A4P53420 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.6■□□□□ 0.57
COL4A4P53420 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL4A4P53420 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
COL4A4P53420 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
COL4A4P53420 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms