Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RPA3P35244 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RPA3P35244 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.77■□□□□ 0.44
RPA3P35244 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RPA3P35244 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.77■□□□□ 0.44
RPA3P35244 AC063952.2-201ENST00000498792 1227 ntBASIC17.77■□□□□ 0.44
RPA3P35244 AC022616.7-201ENST00000525383 220 ntBASIC17.77■□□□□ 0.44
RPA3P35244 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RPA3P35244 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.77■□□□□ 0.44
RPA3P35244 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.77■□□□□ 0.44
RPA3P35244 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.77■□□□□ 0.44
RPA3P35244 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RPA3P35244 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RPA3P35244 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RPA3P35244 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RPA3P35244 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
RPA3P35244 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
RPA3P35244 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.77■□□□□ 0.43
RPA3P35244 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RPA3P35244 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.77■□□□□ 0.43
RPA3P35244 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
RPA3P35244 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RPA3P35244 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.76■□□□□ 0.43
RPA3P35244 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RPA3P35244 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.76■□□□□ 0.43
RPA3P35244 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 FLJ38576-201ENST00000623820 2459 ntBASIC17.76■□□□□ 0.43
RPA3P35244 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.76■□□□□ 0.43
RPA3P35244 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
RPA3P35244 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
RPA3P35244 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.76■□□□□ 0.43
RPA3P35244 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 SPDYE15P-201ENST00000424157 909 ntBASIC17.76■□□□□ 0.43
RPA3P35244 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RPA3P35244 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
RPA3P35244 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.76■□□□□ 0.43
RPA3P35244 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RPA3P35244 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
RPA3P35244 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPA3P35244 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
RPA3P35244 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.76■□□□□ 0.43
RPA3P35244 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.76■□□□□ 0.43
RPA3P35244 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.75■□□□□ 0.43
RPA3P35244 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPA3P35244 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.75■□□□□ 0.43
RPA3P35244 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
RPA3P35244 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.75■□□□□ 0.43
RPA3P35244 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPA3P35244 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.75■□□□□ 0.43
RPA3P35244 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPA3P35244 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.75■□□□□ 0.43
RPA3P35244 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
RPA3P35244 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.75■□□□□ 0.43
RPA3P35244 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.75■□□□□ 0.43
RPA3P35244 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.75■□□□□ 0.43
RPA3P35244 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
RPA3P35244 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.75■□□□□ 0.43
RPA3P35244 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPA3P35244 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPA3P35244 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPA3P35244 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
RPA3P35244 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPA3P35244 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.75■□□□□ 0.43
RPA3P35244 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPA3P35244 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPA3P35244 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.75■□□□□ 0.43
RPA3P35244 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.75■□□□□ 0.43
RPA3P35244 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPA3P35244 AC046158.3-201ENST00000624947 2558 ntBASIC17.75■□□□□ 0.43
RPA3P35244 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
RPA3P35244 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPA3P35244 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.74■□□□□ 0.43
RPA3P35244 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.74■□□□□ 0.43
RPA3P35244 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPA3P35244 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPA3P35244 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPA3P35244 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPA3P35244 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPA3P35244 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.74■□□□□ 0.43
RPA3P35244 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RPA3P35244 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RPA3P35244 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.74■□□□□ 0.43
RPA3P35244 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.74■□□□□ 0.43
RPA3P35244 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms