Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL5A3P25940 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL5A3P25940 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.87■■□□□ 1.09
COL5A3P25940 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL5A3P25940 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC21.87■■□□□ 1.09
COL5A3P25940 RPL30-202ENST00000396070 440 ntTSL 2 BASIC21.87■■□□□ 1.09
COL5A3P25940 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.87■■□□□ 1.09
COL5A3P25940 BAD-207ENST00000544785 525 ntTSL 3 BASIC21.87■■□□□ 1.09
COL5A3P25940 AL512356.2-201ENST00000546955 174 ntBASIC21.87■■□□□ 1.09
COL5A3P25940 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL5A3P25940 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
COL5A3P25940 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.87■■□□□ 1.09
COL5A3P25940 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC21.87■■□□□ 1.09
COL5A3P25940 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL5A3P25940 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.87■■□□□ 1.09
COL5A3P25940 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
COL5A3P25940 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
COL5A3P25940 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL5A3P25940 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL5A3P25940 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL5A3P25940 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL5A3P25940 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL5A3P25940 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC21.86■■□□□ 1.09
COL5A3P25940 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL5A3P25940 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.86■■□□□ 1.09
COL5A3P25940 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
COL5A3P25940 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC21.86■■□□□ 1.09
COL5A3P25940 AC125807.1-201ENST00000483097 614 ntBASIC21.86■■□□□ 1.09
COL5A3P25940 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.86■■□□□ 1.09
COL5A3P25940 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.86■■□□□ 1.09
COL5A3P25940 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC21.86■■□□□ 1.09
COL5A3P25940 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC21.86■■□□□ 1.09
COL5A3P25940 CD7-202ENST00000578509 925 ntTSL 3 BASIC21.86■■□□□ 1.09
COL5A3P25940 AC012645.4-201ENST00000610691 1061 ntBASIC21.86■■□□□ 1.09
COL5A3P25940 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
COL5A3P25940 AL390754.1-201ENST00000619088 582 ntBASIC21.86■■□□□ 1.09
COL5A3P25940 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL5A3P25940 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL5A3P25940 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
COL5A3P25940 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
COL5A3P25940 AC084121.4-201ENST00000641598 221 ntBASIC21.86■■□□□ 1.09
COL5A3P25940 AF228730.8-201ENST00000642140 221 ntBASIC21.86■■□□□ 1.09
COL5A3P25940 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL5A3P25940 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
COL5A3P25940 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL5A3P25940 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC21.86■■□□□ 1.09
COL5A3P25940 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC21.86■■□□□ 1.09
COL5A3P25940 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.86■■□□□ 1.09
COL5A3P25940 TREML5P-201ENST00000421694 576 ntBASIC21.86■■□□□ 1.09
COL5A3P25940 AC107890.1-201ENST00000422478 521 ntBASIC21.86■■□□□ 1.09
COL5A3P25940 AC092580.3-201ENST00000430932 139 ntBASIC21.86■■□□□ 1.09
COL5A3P25940 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC21.86■■□□□ 1.09
COL5A3P25940 FAM207CP-201ENST00000443486 507 ntBASIC21.86■■□□□ 1.09
COL5A3P25940 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC21.86■■□□□ 1.09
COL5A3P25940 RN7SL204P-201ENST00000582831 262 ntBASIC21.86■■□□□ 1.09
COL5A3P25940 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL5A3P25940 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
COL5A3P25940 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL5A3P25940 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.85■■□□□ 1.09
COL5A3P25940 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL5A3P25940 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.85■■□□□ 1.09
COL5A3P25940 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
COL5A3P25940 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL5A3P25940 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL5A3P25940 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL5A3P25940 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
COL5A3P25940 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
COL5A3P25940 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL5A3P25940 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC21.85■■□□□ 1.09
COL5A3P25940 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL5A3P25940 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.85■■□□□ 1.09
COL5A3P25940 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.85■■□□□ 1.09
COL5A3P25940 AC055876.3-201ENST00000431496 288 ntBASIC21.85■■□□□ 1.09
COL5A3P25940 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21.85■■□□□ 1.09
COL5A3P25940 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
COL5A3P25940 AC138649.4-201ENST00000612222 287 ntBASIC21.85■■□□□ 1.09
COL5A3P25940 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL5A3P25940 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
COL5A3P25940 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL5A3P25940 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC21.85■■□□□ 1.09
COL5A3P25940 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC21.85■■□□□ 1.09
COL5A3P25940 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL5A3P25940 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL5A3P25940 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC21.84■■□□□ 1.09
COL5A3P25940 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.84■■□□□ 1.09
COL5A3P25940 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC21.84■■□□□ 1.09
COL5A3P25940 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.84■■□□□ 1.09
COL5A3P25940 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
COL5A3P25940 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
COL5A3P25940 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL5A3P25940 AC190387.1-201ENST00000551683 408 ntBASIC21.84■■□□□ 1.09
COL5A3P25940 AL158211.3-201ENST00000607385 239 ntBASIC21.84■■□□□ 1.09
COL5A3P25940 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL5A3P25940 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.84■■□□□ 1.09
COL5A3P25940 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL5A3P25940 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL5A3P25940 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL5A3P25940 AC015922.1-201ENST00000421102 1152 ntBASIC21.83■■□□□ 1.09
COL5A3P25940 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC21.83■■□□□ 1.09
COL5A3P25940 AF228730.6-201ENST00000641497 218 ntBASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms