Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.71■□□□□ 0.91
HMGB1P09429 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
HMGB1P09429 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.71■□□□□ 0.91
HMGB1P09429 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HMGB1P09429 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
HMGB1P09429 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HMGB1P09429 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGB1P09429 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGB1P09429 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGB1P09429 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.7■□□□□ 0.9
HMGB1P09429 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HMGB1P09429 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGB1P09429 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.7■□□□□ 0.9
HMGB1P09429 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGB1P09429 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 AC096582.2-201ENST00000510860 516 ntBASIC20.7■□□□□ 0.9
HMGB1P09429 AP000867.3-201ENST00000524675 377 ntBASIC20.7■□□□□ 0.9
HMGB1P09429 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.7■□□□□ 0.9
HMGB1P09429 AC114341.1-201ENST00000618070 349 ntBASIC20.7■□□□□ 0.9
HMGB1P09429 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGB1P09429 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
HMGB1P09429 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB1P09429 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 AC046185.3-201ENST00000623228 1824 ntBASIC20.69■□□□□ 0.9
HMGB1P09429 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
HMGB1P09429 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.69■□□□□ 0.9
HMGB1P09429 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HMGB1P09429 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
HMGB1P09429 AC092119.3-201ENST00000612618 583 ntBASIC20.69■□□□□ 0.9
HMGB1P09429 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HMGB1P09429 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 AC116353.5-201ENST00000638148 1699 ntBASIC20.69■□□□□ 0.9
HMGB1P09429 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.69■□□□□ 0.9
HMGB1P09429 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
HMGB1P09429 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.69■□□□□ 0.9
HMGB1P09429 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB1P09429 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB1P09429 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
HMGB1P09429 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.68■□□□□ 0.9
HMGB1P09429 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB1P09429 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB1P09429 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB1P09429 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HMGB1P09429 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB1P09429 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.68■□□□□ 0.9
HMGB1P09429 RCN1P2-201ENST00000398357 915 ntBASIC20.68■□□□□ 0.9
HMGB1P09429 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.68■□□□□ 0.9
HMGB1P09429 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.68■□□□□ 0.9
HMGB1P09429 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB1P09429 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.68■□□□□ 0.9
HMGB1P09429 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.68■□□□□ 0.9
HMGB1P09429 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.68■□□□□ 0.9
HMGB1P09429 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB1P09429 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.68■□□□□ 0.9
HMGB1P09429 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.68■□□□□ 0.9
HMGB1P09429 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.68■□□□□ 0.9
HMGB1P09429 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB1P09429 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGB1P09429 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGB1P09429 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGB1P09429 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
HMGB1P09429 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.67■□□□□ 0.9
HMGB1P09429 AC003669.1-201ENST00000334569 611 ntBASIC20.67■□□□□ 0.9
HMGB1P09429 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGB1P09429 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGB1P09429 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGB1P09429 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms