Protein–RNA interactions for Protein: O43364

HOXA2, Homeobox protein Hox-A2, humanhuman

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA2O43364 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 AC025580.3-201ENST00000617932 1424 ntBASIC18.69■□□□□ 0.58
HOXA2O43364 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.69■□□□□ 0.58
HOXA2O43364 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.69■□□□□ 0.58
HOXA2O43364 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
HOXA2O43364 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXA2O43364 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXA2O43364 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXA2O43364 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXA2O43364 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXA2O43364 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXA2O43364 AC046185.3-201ENST00000623228 1824 ntBASIC18.69■□□□□ 0.58
HOXA2O43364 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXA2O43364 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXA2O43364 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HOXA2O43364 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
HOXA2O43364 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA2O43364 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 AC090164.3-201ENST00000610780 2143 ntBASIC18.68■□□□□ 0.58
HOXA2O43364 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXA2O43364 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 AC093503.3-201ENST00000624917 2352 ntBASIC18.68■□□□□ 0.58
HOXA2O43364 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HOXA2O43364 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXA2O43364 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.68■□□□□ 0.58
HOXA2O43364 FAM58CP-201ENST00000435741 640 ntBASIC18.68■□□□□ 0.58
HOXA2O43364 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXA2O43364 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXA2O43364 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXA2O43364 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
HOXA2O43364 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA2O43364 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
HOXA2O43364 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXA2O43364 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
HOXA2O43364 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HOXA2O43364 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HOXA2O43364 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXA2O43364 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXA2O43364 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.67■□□□□ 0.58
HOXA2O43364 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXA2O43364 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA2O43364 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXA2O43364 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA2O43364 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HOXA2O43364 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA2O43364 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA2O43364 TNXA-203ENST00000507684 2038 ntBASIC18.66■□□□□ 0.58
HOXA2O43364 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXA2O43364 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA2O43364 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
HOXA2O43364 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXA2O43364 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA2O43364 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.66■□□□□ 0.58
HOXA2O43364 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
HOXA2O43364 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXA2O43364 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA2O43364 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.66■□□□□ 0.58
HOXA2O43364 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.66■□□□□ 0.58
HOXA2O43364 AP000344.2-201ENST00000512987 629 ntBASIC18.66■□□□□ 0.58
HOXA2O43364 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXA2O43364 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXA2O43364 AP002472.1-201ENST00000577490 586 ntBASIC18.66■□□□□ 0.58
HOXA2O43364 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXA2O43364 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HOXA2O43364 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.66■□□□□ 0.58
HOXA2O43364 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA2O43364 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA2O43364 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA2O43364 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms