Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CLDN3O15551 FZD10-202ENST00000539839 3282 ntBASIC19.2■□□□□ 0.66
CLDN3O15551 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CLDN3O15551 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
CLDN3O15551 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.19■□□□□ 0.66
CLDN3O15551 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 SCARNA2-201ENST00000458748 420 ntBASIC19.19■□□□□ 0.66
CLDN3O15551 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
CLDN3O15551 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.19■□□□□ 0.66
CLDN3O15551 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CLDN3O15551 LINC01451-201ENST00000623792 534 ntBASIC19.19■□□□□ 0.66
CLDN3O15551 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.19■□□□□ 0.66
CLDN3O15551 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.19■□□□□ 0.66
CLDN3O15551 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CLDN3O15551 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CLDN3O15551 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CLDN3O15551 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN3O15551 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 AL356309.3-201ENST00000624132 1934 ntBASIC19.18■□□□□ 0.66
CLDN3O15551 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CLDN3O15551 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.18■□□□□ 0.66
CLDN3O15551 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.18■□□□□ 0.66
CLDN3O15551 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.18■□□□□ 0.66
CLDN3O15551 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.18■□□□□ 0.66
CLDN3O15551 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CLDN3O15551 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CLDN3O15551 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.18■□□□□ 0.66
CLDN3O15551 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.18■□□□□ 0.66
CLDN3O15551 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN3O15551 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.17■□□□□ 0.66
CLDN3O15551 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 AC132938.5-201ENST00000624980 1813 ntBASIC19.17■□□□□ 0.66
CLDN3O15551 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CLDN3O15551 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.17■□□□□ 0.66
CLDN3O15551 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.17■□□□□ 0.66
CLDN3O15551 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 AC026396.1-201ENST00000419388 421 ntBASIC19.17■□□□□ 0.66
CLDN3O15551 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.17■□□□□ 0.66
CLDN3O15551 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.17■□□□□ 0.66
CLDN3O15551 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.17■□□□□ 0.66
CLDN3O15551 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
CLDN3O15551 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CLDN3O15551 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CLDN3O15551 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CLDN3O15551 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN3O15551 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.16■□□□□ 0.66
CLDN3O15551 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.16■□□□□ 0.66
CLDN3O15551 AL355312.1-201ENST00000407115 2176 ntBASIC19.16■□□□□ 0.66
CLDN3O15551 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
CLDN3O15551 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CLDN3O15551 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 AC079776.2-201ENST00000641154 1609 ntBASIC19.16■□□□□ 0.66
CLDN3O15551 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
CLDN3O15551 MYCLP1-201ENST00000372451 1075 ntBASIC19.16■□□□□ 0.66
CLDN3O15551 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.16■□□□□ 0.66
CLDN3O15551 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CLDN3O15551 AP002469.2-201ENST00000531724 424 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms