Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL17A1Q9UMD9 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC26.33■■□□□ 1.81
COL17A1Q9UMD9 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC26.33■■□□□ 1.81
COL17A1Q9UMD9 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL17A1Q9UMD9 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC26.33■■□□□ 1.81
COL17A1Q9UMD9 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC26.33■■□□□ 1.81
COL17A1Q9UMD9 API5-211ENST00000534695 560 ntTSL 5 BASIC26.33■■□□□ 1.81
COL17A1Q9UMD9 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL17A1Q9UMD9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL17A1Q9UMD9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.81
COL17A1Q9UMD9 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
COL17A1Q9UMD9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 CDK4-206ENST00000549606 558 ntTSL 2 BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 KRT8P23-201ENST00000560090 1207 ntBASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 AC138969.3-201ENST00000546612 1459 ntBASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 AC138932.2-201ENST00000548268 1459 ntBASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 AC126755.4-201ENST00000549796 1459 ntBASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
COL17A1Q9UMD9 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 PARP8-218ENST00000513738 596 ntTSL 4 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 SPTSSB-204ENST00000617024 1292 ntBASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 AL162274.1-201ENST00000617191 1098 ntBASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL17A1Q9UMD9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 AC112492.5-201ENST00000421897 457 ntBASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 MIR4525-201ENST00000580000 75 ntBASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 SSH2-210ENST00000582084 560 ntTSL 3 BASIC26.3■■□□□ 1.8
COL17A1Q9UMD9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 MXI1-205ENST00000393134 889 ntTSL 2 BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 AC087163.2-201ENST00000457299 853 ntBASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 AC119751.2-201ENST00000504529 210 ntBASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 AC107918.2-201ENST00000530817 355 ntBASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 ALG1L8P-201ENST00000533887 760 ntBASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL17A1Q9UMD9 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms