Protein–RNA interactions for Protein: Q9ULT6

ZNRF3, E3 ubiquitin-protein ligase ZNRF3, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNRF3Q9ULT6 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 COPE-202ENST00000349893 948 ntTSL 2 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 AC140658.5-201ENST00000438532 169 ntBASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 AL592309.1-201ENST00000443127 649 ntBASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 AC069335.1-201ENST00000489972 472 ntBASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 AC051619.7-201ENST00000568314 623 ntBASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 RBM7-207ENST00000544582 692 ntTSL 3 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 AL512356.2-201ENST00000546955 174 ntBASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 AL035252.4-201ENST00000624174 288 ntBASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 CROCCP3-202ENST00000420820 1947 ntBASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNRF3Q9ULT6 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 AC005034.1-201ENST00000426657 489 ntBASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 AC079140.1-201ENST00000508039 487 ntBASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNRF3Q9ULT6 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNRF3Q9ULT6 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms