Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 AL137013.1-201ENST00000432946 1228 ntBASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 VENTXP5-201ENST00000523979 775 ntBASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 AC005363.2-201ENST00000618631 242 ntBASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 AC005915.1-201ENST00000624912 2018 ntBASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 TSPY5P-201ENST00000426936 936 ntBASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 AL359075.1-203ENST00000462729 1002 ntBASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 AC092053.1-201ENST00000605787 1936 ntBASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMA1Q9UHB6 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 HOMER2P1-201ENST00000455653 964 ntBASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 FLJ38576-201ENST00000623820 2459 ntBASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.18■□□□□ 0.66
LIMA1Q9UHB6 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms