Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 AL133373.2-201ENST00000623187 2828 ntBASIC17.65■□□□□ 0.42
DKK3Q9UBP4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 AL020989.1-201ENST00000422979 469 ntBASIC17.65■□□□□ 0.42
DKK3Q9UBP4 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 LINC01451-201ENST00000623792 534 ntBASIC17.65■□□□□ 0.42
DKK3Q9UBP4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 AL022326.1-202ENST00000641533 845 ntBASIC17.65■□□□□ 0.42
DKK3Q9UBP4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
DKK3Q9UBP4 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
DKK3Q9UBP4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.64■□□□□ 0.42
DKK3Q9UBP4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
DKK3Q9UBP4 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
DKK3Q9UBP4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
DKK3Q9UBP4 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
DKK3Q9UBP4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 KLF4P1-201ENST00000412782 1185 ntBASIC17.64■□□□□ 0.41
DKK3Q9UBP4 AL031284.1-201ENST00000419297 478 ntBASIC17.64■□□□□ 0.41
DKK3Q9UBP4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 AP001005.1-201ENST00000571755 1248 ntBASIC17.64■□□□□ 0.41
DKK3Q9UBP4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 AC025062.2-201ENST00000605477 670 ntBASIC17.64■□□□□ 0.41
DKK3Q9UBP4 AC148477.8-201ENST00000624298 468 ntBASIC17.64■□□□□ 0.41
DKK3Q9UBP4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
DKK3Q9UBP4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 REXO1L11P-201ENST00000620964 1927 ntBASIC17.63■□□□□ 0.41
DKK3Q9UBP4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 RPS2P28-201ENST00000314255 741 ntBASIC17.63■□□□□ 0.41
DKK3Q9UBP4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.63■□□□□ 0.41
DKK3Q9UBP4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms