Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 AP001094.4-201ENST00000579008 2176 ntBASIC15.72■□□□□ 0.11
VSX1Q9NZR4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 AC016396.2-201ENST00000562575 1417 ntBASIC15.72■□□□□ 0.11
VSX1Q9NZR4 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 AL671277.2-201ENST00000458060 996 ntBASIC15.72■□□□□ 0.11
VSX1Q9NZR4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 LINC01238-205ENST00000567549 1107 ntBASIC15.72■□□□□ 0.11
VSX1Q9NZR4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VSX1Q9NZR4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 RCN1P1-201ENST00000400413 996 ntBASIC15.71■□□□□ 0.11
VSX1Q9NZR4 AL645929.1-201ENST00000420084 975 ntBASIC15.71■□□□□ 0.11
VSX1Q9NZR4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.71■□□□□ 0.11
VSX1Q9NZR4 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 LYSMD4-203ENST00000378904 2122 ntBASIC15.71■□□□□ 0.11
VSX1Q9NZR4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
VSX1Q9NZR4 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
VSX1Q9NZR4 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.1
VSX1Q9NZR4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.71■□□□□ 0.1
VSX1Q9NZR4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
VSX1Q9NZR4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
VSX1Q9NZR4 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
VSX1Q9NZR4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.71■□□□□ 0.1
VSX1Q9NZR4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.7■□□□□ 0.1
VSX1Q9NZR4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 COX5BP2-201ENST00000392354 334 ntBASIC15.7■□□□□ 0.1
VSX1Q9NZR4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 AC002558.1-201ENST00000488906 803 ntBASIC15.7■□□□□ 0.1
VSX1Q9NZR4 DUX4L26-201ENST00000489078 1255 ntBASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms