Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
MMP28Q9H239 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
MMP28Q9H239 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
MMP28Q9H239 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC15.57■□□□□ 0.08
MMP28Q9H239 NUDT16P1-203ENST00000513809 620 ntBASIC15.57■□□□□ 0.08
MMP28Q9H239 PENK-204ENST00000518770 863 ntTSL 2 BASIC15.57■□□□□ 0.08
MMP28Q9H239 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC15.57■□□□□ 0.08
MMP28Q9H239 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC15.57■□□□□ 0.08
MMP28Q9H239 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 MIR6786-201ENST00000616843 113 ntBASIC15.57■□□□□ 0.08
MMP28Q9H239 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
MMP28Q9H239 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 AC005052.1-201ENST00000625181 2492 ntBASIC15.57■□□□□ 0.08
MMP28Q9H239 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
MMP28Q9H239 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.57■□□□□ 0.08
MMP28Q9H239 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC15.57■□□□□ 0.08
MMP28Q9H239 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.57■□□□□ 0.08
MMP28Q9H239 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
MMP28Q9H239 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
MMP28Q9H239 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.56■□□□□ 0.08
MMP28Q9H239 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
MMP28Q9H239 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.56■□□□□ 0.08
MMP28Q9H239 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 AL355355.2-201ENST00000442321 338 ntBASIC15.56■□□□□ 0.08
MMP28Q9H239 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC15.56■□□□□ 0.08
MMP28Q9H239 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC15.56■□□□□ 0.08
MMP28Q9H239 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC15.56■□□□□ 0.08
MMP28Q9H239 B3GAT3P1-201ENST00000471720 806 ntBASIC15.56■□□□□ 0.08
MMP28Q9H239 AC091390.4-202ENST00000476426 537 ntBASIC15.56■□□□□ 0.08
MMP28Q9H239 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC15.56■□□□□ 0.08
MMP28Q9H239 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC15.56■□□□□ 0.08
MMP28Q9H239 MIR4785-201ENST00000585005 73 ntBASIC15.56■□□□□ 0.08
MMP28Q9H239 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC15.56■□□□□ 0.08
MMP28Q9H239 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.56■□□□□ 0.08
MMP28Q9H239 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
MMP28Q9H239 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
MMP28Q9H239 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.56■□□□□ 0.08
MMP28Q9H239 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
MMP28Q9H239 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.56■□□□□ 0.08
MMP28Q9H239 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.56■□□□□ 0.08
MMP28Q9H239 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.56■□□□□ 0.08
MMP28Q9H239 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MMP28Q9H239 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
MMP28Q9H239 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms