Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 AC079776.4-201ENST00000511039 504 ntBASIC17.62■□□□□ 0.41
TRIM4Q9C037 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM4Q9C037 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
TRIM4Q9C037 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 AC139530.3-201ENST00000620344 690 ntBASIC17.61■□□□□ 0.41
TRIM4Q9C037 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 AC108860.2-201ENST00000562760 2183 ntBASIC17.61■□□□□ 0.41
TRIM4Q9C037 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.61■□□□□ 0.41
TRIM4Q9C037 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.61■□□□□ 0.41
TRIM4Q9C037 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM4Q9C037 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 FLJ38576-201ENST00000623820 2459 ntBASIC17.6■□□□□ 0.41
TRIM4Q9C037 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.6■□□□□ 0.41
TRIM4Q9C037 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.6■□□□□ 0.41
TRIM4Q9C037 TSPY17P-201ENST00000450329 467 ntBASIC17.6■□□□□ 0.41
TRIM4Q9C037 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 AL023803.3-201ENST00000615559 522 ntBASIC17.6■□□□□ 0.41
TRIM4Q9C037 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.6■□□□□ 0.41
TRIM4Q9C037 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM4Q9C037 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms