Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.21■□□□□ 0.03
COL12A1Q99715 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL12A1Q99715 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
COL12A1Q99715 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC15.21■□□□□ 0.03
COL12A1Q99715 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL12A1Q99715 AC084121.4-201ENST00000641598 221 ntBASIC15.21■□□□□ 0.03
COL12A1Q99715 AF228730.8-201ENST00000642140 221 ntBASIC15.21■□□□□ 0.03
COL12A1Q99715 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
COL12A1Q99715 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL12A1Q99715 CLDN5-201ENST00000403084 2357 ntBASIC15.21■□□□□ 0.03
COL12A1Q99715 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL12A1Q99715 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
COL12A1Q99715 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL12A1Q99715 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC15.21■□□□□ 0.03
COL12A1Q99715 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.21■□□□□ 0.03
COL12A1Q99715 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
COL12A1Q99715 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
COL12A1Q99715 AC002056.1-201ENST00000395613 760 ntBASIC15.21■□□□□ 0.03
COL12A1Q99715 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
COL12A1Q99715 AC079140.1-201ENST00000508039 487 ntBASIC15.21■□□□□ 0.03
COL12A1Q99715 AC009407.1-201ENST00000568958 598 ntBASIC15.21■□□□□ 0.03
COL12A1Q99715 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.21■□□□□ 0.03
COL12A1Q99715 AL138828.2-201ENST00000615812 383 ntBASIC15.21■□□□□ 0.03
COL12A1Q99715 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL12A1Q99715 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL12A1Q99715 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL12A1Q99715 PI4KAP1-204ENST00000612579 1703 ntBASIC15.21■□□□□ 0.02
COL12A1Q99715 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL12A1Q99715 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL12A1Q99715 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
COL12A1Q99715 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL12A1Q99715 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.21■□□□□ 0.02
COL12A1Q99715 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.2■□□□□ 0.02
COL12A1Q99715 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.2■□□□□ 0.02
COL12A1Q99715 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
COL12A1Q99715 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.2■□□□□ 0.02
COL12A1Q99715 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.2■□□□□ 0.02
COL12A1Q99715 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.2■□□□□ 0.02
COL12A1Q99715 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
COL12A1Q99715 TMEM14DP-201ENST00000422205 345 ntBASIC15.2■□□□□ 0.02
COL12A1Q99715 TSSK5P-201ENST00000423978 907 ntBASIC15.2■□□□□ 0.02
COL12A1Q99715 RBPMS2P1-201ENST00000437762 623 ntBASIC15.2■□□□□ 0.02
COL12A1Q99715 FAM86C2P-203ENST00000528684 1004 ntBASIC15.2■□□□□ 0.02
COL12A1Q99715 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 SNX29P1-201ENST00000548357 1007 ntBASIC15.2■□□□□ 0.02
COL12A1Q99715 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.2■□□□□ 0.02
COL12A1Q99715 ACTL9-202ENST00000612068 1252 ntBASIC15.2■□□□□ 0.02
COL12A1Q99715 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
COL12A1Q99715 FZD10-202ENST00000539839 3282 ntBASIC15.2■□□□□ 0.02
COL12A1Q99715 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
COL12A1Q99715 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
COL12A1Q99715 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC15.2■□□□□ 0.02
COL12A1Q99715 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.2■□□□□ 0.02
COL12A1Q99715 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL12A1Q99715 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC15.2■□□□□ 0.02
COL12A1Q99715 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
COL12A1Q99715 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.19■□□□□ 0.02
COL12A1Q99715 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.19■□□□□ 0.02
COL12A1Q99715 RN7SL190P-201ENST00000582519 257 ntBASIC15.19■□□□□ 0.02
COL12A1Q99715 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.19■□□□□ 0.02
COL12A1Q99715 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.19■□□□□ 0.02
COL12A1Q99715 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms