Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.62■□□□□ 0.41
TTC28Q96AY4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 COX5BP2-201ENST00000392354 334 ntBASIC17.62■□□□□ 0.41
TTC28Q96AY4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 AC104989.1-201ENST00000519711 778 ntBASIC17.62■□□□□ 0.41
TTC28Q96AY4 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 AC026740.1-201ENST00000607068 791 ntBASIC17.62■□□□□ 0.41
TTC28Q96AY4 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.62■□□□□ 0.41
TTC28Q96AY4 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TTC28Q96AY4 MIR346-201ENST00000362234 95 ntBASIC17.61■□□□□ 0.41
TTC28Q96AY4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 GNAQP1-201ENST00000444815 1067 ntBASIC17.61■□□□□ 0.41
TTC28Q96AY4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.61■□□□□ 0.41
TTC28Q96AY4 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 AC015967.2-201ENST00000624092 234 ntBASIC17.61■□□□□ 0.41
TTC28Q96AY4 AC006435.4-201ENST00000625037 234 ntBASIC17.61■□□□□ 0.41
TTC28Q96AY4 AL356737.1-201ENST00000634391 234 ntBASIC17.61■□□□□ 0.41
TTC28Q96AY4 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TTC28Q96AY4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TTC28Q96AY4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.61■□□□□ 0.41
TTC28Q96AY4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TTC28Q96AY4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
TTC28Q96AY4 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.61■□□□□ 0.41
TTC28Q96AY4 IGHV3-62-201ENST00000520057 340 ntBASIC17.61■□□□□ 0.41
TTC28Q96AY4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.61■□□□□ 0.41
TTC28Q96AY4 RN7SL219P-201ENST00000582872 296 ntBASIC17.61■□□□□ 0.41
TTC28Q96AY4 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TTC28Q96AY4 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.61■□□□□ 0.41
TTC28Q96AY4 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 AC006538.1-201ENST00000567905 1585 ntBASIC17.61■□□□□ 0.41
TTC28Q96AY4 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TTC28Q96AY4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 AC087499.6-201ENST00000411576 835 ntBASIC17.6■□□□□ 0.41
TTC28Q96AY4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 IGHJ2P-201ENST00000454480 60 ntBASIC17.6■□□□□ 0.41
TTC28Q96AY4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 MBP-227ENST00000526111 581 ntTSL 4 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TTC28Q96AY4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
TTC28Q96AY4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TTC28Q96AY4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.59■□□□□ 0.41
TTC28Q96AY4 MPRIPP1-201ENST00000452433 1089 ntBASIC17.59■□□□□ 0.41
TTC28Q96AY4 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms