Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC23.65■■□□□ 1.38
NPHP3Q7Z494 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC23.65■■□□□ 1.38
NPHP3Q7Z494 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC23.65■■□□□ 1.38
NPHP3Q7Z494 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC23.65■■□□□ 1.38
NPHP3Q7Z494 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
NPHP3Q7Z494 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 RBPMS2P1-201ENST00000437762 623 ntBASIC23.64■■□□□ 1.38
NPHP3Q7Z494 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 AL158211.3-201ENST00000607385 239 ntBASIC23.64■■□□□ 1.38
NPHP3Q7Z494 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC23.64■■□□□ 1.38
NPHP3Q7Z494 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP3Q7Z494 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP3Q7Z494 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP3Q7Z494 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
NPHP3Q7Z494 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP3Q7Z494 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP3Q7Z494 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP3Q7Z494 AL096828.2-201ENST00000567259 1965 ntBASIC23.64■■□□□ 1.37
NPHP3Q7Z494 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 CRB3P1-201ENST00000449338 276 ntBASIC23.63■■□□□ 1.37
NPHP3Q7Z494 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 MEIS3P1-201ENST00000495167 958 ntBASIC23.63■■□□□ 1.37
NPHP3Q7Z494 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 AL031598.1-201ENST00000561511 1773 ntBASIC23.63■■□□□ 1.37
NPHP3Q7Z494 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP3Q7Z494 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 DUX4L17-201ENST00000557360 1267 ntBASIC23.62■■□□□ 1.37
NPHP3Q7Z494 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 RAB34-224ENST00000636513 888 ntTSL 5 BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 AC073592.3-201ENST00000625118 1834 ntBASIC23.62■■□□□ 1.37
NPHP3Q7Z494 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP3Q7Z494 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 SPCS2P4-201ENST00000436160 681 ntBASIC23.61■■□□□ 1.37
NPHP3Q7Z494 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 COQ6-210ENST00000554920 649 ntTSL 3 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 HARS-203ENST00000431330 1774 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC23.61■■□□□ 1.37
NPHP3Q7Z494 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP3Q7Z494 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC23.6■■□□□ 1.37
NPHP3Q7Z494 SPDYE14P-201ENST00000442619 822 ntBASIC23.6■■□□□ 1.37
NPHP3Q7Z494 IGHV3-42-201ENST00000520410 361 ntBASIC23.6■■□□□ 1.37
NPHP3Q7Z494 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
NPHP3Q7Z494 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP3Q7Z494 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP3Q7Z494 AC008677.1-201ENST00000519230 1561 ntBASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms