Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AC138028.4-201ENST00000564984 1845 ntBASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 AC004790.2-201ENST00000623588 572 ntBASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNFT1Q5M7Z0 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 REXO1L11P-201ENST00000620964 1927 ntBASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 LINC00982-205ENST00000420957 435 ntBASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 VN2R19P-201ENST00000442399 1052 ntBASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 AC002347.1-201ENST00000569543 541 ntBASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 MIR4751-201ENST00000578027 74 ntBASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC15.77■□□□□ 0.12
RNFT1Q5M7Z0 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNFT1Q5M7Z0 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNFT1Q5M7Z0 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RNFT1Q5M7Z0 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNFT1Q5M7Z0 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
RNFT1Q5M7Z0 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 PTCHD3P3-201ENST00000403073 906 ntBASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 CRYGEP-201ENST00000412192 528 ntBASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 AC018845.2-201ENST00000568326 409 ntBASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 MNT-208ENST00000575394 606 ntTSL 4 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 AL353135.1-201ENST00000606729 504 ntBASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 AC092865.6-201ENST00000642101 219 ntBASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNFT1Q5M7Z0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms