Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A4P53420 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A4P53420 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A4P53420 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL4A4P53420 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 AL390961.4-201ENST00000623958 2535 ntBASIC18.65■□□□□ 0.58
COL4A4P53420 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 AC003669.1-201ENST00000334569 611 ntBASIC18.65■□□□□ 0.58
COL4A4P53420 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A4P53420 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 AC236430.1-201ENST00000402231 743 ntBASIC18.65■□□□□ 0.58
COL4A4P53420 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A4P53420 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL4A4P53420 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A4P53420 AC190387.1-201ENST00000551683 408 ntBASIC18.65■□□□□ 0.58
COL4A4P53420 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A4P53420 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A4P53420 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A4P53420 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL4A4P53420 AC105339.1-204ENST00000636249 355 ntBASIC18.65■□□□□ 0.58
COL4A4P53420 AF228730.6-201ENST00000641497 218 ntBASIC18.65■□□□□ 0.58
COL4A4P53420 AC084121.3-201ENST00000641716 218 ntBASIC18.65■□□□□ 0.58
COL4A4P53420 AC105233.6-201ENST00000642093 218 ntBASIC18.65■□□□□ 0.58
COL4A4P53420 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A4P53420 AC008764.6-201ENST00000595909 2069 ntBASIC18.65■□□□□ 0.58
COL4A4P53420 AC025580.3-201ENST00000617932 1424 ntBASIC18.65■□□□□ 0.58
COL4A4P53420 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
COL4A4P53420 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A4P53420 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A4P53420 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
COL4A4P53420 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.64■□□□□ 0.58
COL4A4P53420 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A4P53420 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.64■□□□□ 0.58
COL4A4P53420 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A4P53420 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A4P53420 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A4P53420 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A4P53420 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A4P53420 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A4P53420 DDX43P3-201ENST00000441064 443 ntBASIC18.64■□□□□ 0.57
COL4A4P53420 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.64■□□□□ 0.57
COL4A4P53420 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A4P53420 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A4P53420 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.64■□□□□ 0.57
COL4A4P53420 AC096734.2-201ENST00000562054 433 ntBASIC18.64■□□□□ 0.57
COL4A4P53420 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.64■□□□□ 0.57
COL4A4P53420 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A4P53420 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A4P53420 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A4P53420 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
COL4A4P53420 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
COL4A4P53420 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A4P53420 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A4P53420 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL4A4P53420 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL4A4P53420 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A4P53420 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
COL4A4P53420 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A4P53420 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A4P53420 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
COL4A4P53420 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 SLC25A6P5-201ENST00000435663 894 ntBASIC18.63■□□□□ 0.57
COL4A4P53420 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 AC067863.1-201ENST00000494933 530 ntBASIC18.63■□□□□ 0.57
COL4A4P53420 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A4P53420 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
COL4A4P53420 AC023141.13-201ENST00000604991 943 ntBASIC18.63■□□□□ 0.57
COL4A4P53420 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A4P53420 AC099522.2-201ENST00000607001 744 ntBASIC18.63■□□□□ 0.57
COL4A4P53420 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 AC007064.4-201ENST00000637740 555 ntBASIC18.63■□□□□ 0.57
COL4A4P53420 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A4P53420 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A4P53420 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A4P53420 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms