Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.6■□□□□ 0.57
LHX1P48742 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.6■□□□□ 0.57
LHX1P48742 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.6■□□□□ 0.57
LHX1P48742 AL049840.3-201ENST00000602669 611 ntBASIC18.6■□□□□ 0.57
LHX1P48742 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX1P48742 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.6■□□□□ 0.57
LHX1P48742 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.6■□□□□ 0.57
LHX1P48742 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.6■□□□□ 0.57
LHX1P48742 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.6■□□□□ 0.57
LHX1P48742 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX1P48742 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.6■□□□□ 0.57
LHX1P48742 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.6■□□□□ 0.57
LHX1P48742 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX1P48742 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.6■□□□□ 0.57
LHX1P48742 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX1P48742 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LHX1P48742 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.59■□□□□ 0.57
LHX1P48742 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LHX1P48742 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LHX1P48742 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
LHX1P48742 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
LHX1P48742 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.59■□□□□ 0.57
LHX1P48742 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.59■□□□□ 0.57
LHX1P48742 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.59■□□□□ 0.57
LHX1P48742 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.59■□□□□ 0.57
LHX1P48742 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.59■□□□□ 0.57
LHX1P48742 AC105339.3-201ENST00000560043 636 ntBASIC18.59■□□□□ 0.57
LHX1P48742 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.59■□□□□ 0.57
LHX1P48742 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LHX1P48742 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.59■□□□□ 0.57
LHX1P48742 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.59■□□□□ 0.57
LHX1P48742 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
LHX1P48742 AC006557.2-201ENST00000592985 1240 ntBASIC18.59■□□□□ 0.57
LHX1P48742 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.59■□□□□ 0.57
LHX1P48742 AL139327.4-201ENST00000612362 153 ntBASIC18.59■□□□□ 0.57
LHX1P48742 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
LHX1P48742 AC116407.3-201ENST00000623905 1129 ntBASIC18.59■□□□□ 0.57
LHX1P48742 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
LHX1P48742 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LHX1P48742 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.59■□□□□ 0.57
LHX1P48742 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX1P48742 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LHX1P48742 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LHX1P48742 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
LHX1P48742 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LHX1P48742 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
LHX1P48742 NCF1C-201ENST00000438382 1427 ntBASIC18.58■□□□□ 0.57
LHX1P48742 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LHX1P48742 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
LHX1P48742 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.58■□□□□ 0.57
LHX1P48742 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LHX1P48742 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.58■□□□□ 0.57
LHX1P48742 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
LHX1P48742 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.58■□□□□ 0.56
LHX1P48742 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LHX1P48742 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.58■□□□□ 0.56
LHX1P48742 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.58■□□□□ 0.56
LHX1P48742 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.58■□□□□ 0.56
LHX1P48742 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.58■□□□□ 0.56
LHX1P48742 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.58■□□□□ 0.56
LHX1P48742 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LHX1P48742 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LHX1P48742 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.58■□□□□ 0.56
LHX1P48742 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LHX1P48742 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.58■□□□□ 0.56
LHX1P48742 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.58■□□□□ 0.56
LHX1P48742 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
LHX1P48742 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LHX1P48742 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
LHX1P48742 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LHX1P48742 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.57■□□□□ 0.56
LHX1P48742 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LHX1P48742 AC243591.1-201ENST00000452967 1364 ntBASIC18.57■□□□□ 0.56
LHX1P48742 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LHX1P48742 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.57■□□□□ 0.56
LHX1P48742 AC133963.1-201ENST00000504166 1679 ntBASIC18.57■□□□□ 0.56
LHX1P48742 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LHX1P48742 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LHX1P48742 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LHX1P48742 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
LHX1P48742 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LHX1P48742 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LHX1P48742 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LHX1P48742 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LHX1P48742 IL9RP2-201ENST00000423948 1312 ntBASIC18.57■□□□□ 0.56
LHX1P48742 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms