Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TOP3BO95985 HOXB1-202ENST00000577092 1414 ntBASIC18.04■□□□□ 0.48
TOP3BO95985 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.04■□□□□ 0.48
TOP3BO95985 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TOP3BO95985 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TOP3BO95985 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.04■□□□□ 0.48
TOP3BO95985 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TOP3BO95985 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TOP3BO95985 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TOP3BO95985 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TOP3BO95985 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TOP3BO95985 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TOP3BO95985 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.04■□□□□ 0.48
TOP3BO95985 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.03■□□□□ 0.48
TOP3BO95985 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
TOP3BO95985 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.03■□□□□ 0.48
TOP3BO95985 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.03■□□□□ 0.48
TOP3BO95985 IGHV3-47-201ENST00000425060 335 ntBASIC18.03■□□□□ 0.48
TOP3BO95985 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.03■□□□□ 0.48
TOP3BO95985 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.03■□□□□ 0.48
TOP3BO95985 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.03■□□□□ 0.48
TOP3BO95985 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.03■□□□□ 0.48
TOP3BO95985 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.03■□□□□ 0.48
TOP3BO95985 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.03■□□□□ 0.48
TOP3BO95985 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.03■□□□□ 0.48
TOP3BO95985 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TOP3BO95985 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.03■□□□□ 0.48
TOP3BO95985 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.03■□□□□ 0.48
TOP3BO95985 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TOP3BO95985 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TOP3BO95985 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.02■□□□□ 0.48
TOP3BO95985 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.02■□□□□ 0.48
TOP3BO95985 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 AC022211.2-201ENST00000585075 2527 ntBASIC18.02■□□□□ 0.48
TOP3BO95985 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 AL355312.1-201ENST00000407115 2176 ntBASIC18.02■□□□□ 0.48
TOP3BO95985 NUS1P2-201ENST00000417358 873 ntBASIC18.02■□□□□ 0.48
TOP3BO95985 PMS2P2-201ENST00000425039 1128 ntBASIC18.02■□□□□ 0.48
TOP3BO95985 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.02■□□□□ 0.48
TOP3BO95985 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.02■□□□□ 0.48
TOP3BO95985 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 RNPS1P1-201ENST00000507437 918 ntBASIC18.02■□□□□ 0.48
TOP3BO95985 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.02■□□□□ 0.48
TOP3BO95985 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.02■□□□□ 0.48
TOP3BO95985 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TOP3BO95985 AC005332.3-201ENST00000589904 676 ntBASIC18.02■□□□□ 0.48
TOP3BO95985 AL049840.3-201ENST00000602669 611 ntBASIC18.02■□□□□ 0.48
TOP3BO95985 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
TOP3BO95985 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
TOP3BO95985 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.02■□□□□ 0.47
TOP3BO95985 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.02■□□□□ 0.47
TOP3BO95985 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TOP3BO95985 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TOP3BO95985 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.02■□□□□ 0.47
TOP3BO95985 KRT18P55-202ENST00000578578 1546 ntBASIC18.02■□□□□ 0.47
TOP3BO95985 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
TOP3BO95985 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.02■□□□□ 0.47
TOP3BO95985 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
TOP3BO95985 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.02■□□□□ 0.47
TOP3BO95985 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.02■□□□□ 0.47
TOP3BO95985 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
TOP3BO95985 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TOP3BO95985 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
TOP3BO95985 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TOP3BO95985 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TOP3BO95985 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TOP3BO95985 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TOP3BO95985 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.01■□□□□ 0.47
TOP3BO95985 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
TOP3BO95985 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.01■□□□□ 0.47
TOP3BO95985 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
TOP3BO95985 RPL13AP23-201ENST00000480739 586 ntBASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms