Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.36■□□□□ 0.21
HMGN4O00479 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.36■□□□□ 0.21
HMGN4O00479 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.36■□□□□ 0.21
HMGN4O00479 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.36■□□□□ 0.21
HMGN4O00479 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGN4O00479 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.36■□□□□ 0.21
HMGN4O00479 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGN4O00479 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
HMGN4O00479 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
HMGN4O00479 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGN4O00479 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGN4O00479 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGN4O00479 AC099398.1-201ENST00000567919 2776 ntBASIC16.35■□□□□ 0.21
HMGN4O00479 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.35■□□□□ 0.21
HMGN4O00479 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGN4O00479 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGN4O00479 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 AC019129.2-201ENST00000609837 1235 ntBASIC16.35■□□□□ 0.21
HMGN4O00479 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.35■□□□□ 0.21
HMGN4O00479 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HMGN4O00479 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGN4O00479 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HMGN4O00479 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGN4O00479 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGN4O00479 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HMGN4O00479 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGN4O00479 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGN4O00479 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGN4O00479 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGN4O00479 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGN4O00479 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
HMGN4O00479 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HMGN4O00479 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGN4O00479 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGN4O00479 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
HMGN4O00479 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGN4O00479 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGN4O00479 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.34■□□□□ 0.21
HMGN4O00479 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 AC090616.6-201ENST00000582640 721 ntBASIC16.34■□□□□ 0.21
HMGN4O00479 AC005336.2-201ENST00000593183 939 ntBASIC16.34■□□□□ 0.21
HMGN4O00479 AL138831.2-201ENST00000606564 490 ntBASIC16.34■□□□□ 0.21
HMGN4O00479 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGN4O00479 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HMGN4O00479 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HMGN4O00479 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
HMGN4O00479 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGN4O00479 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGN4O00479 NKILA-202ENST00000614771 2598 ntBASIC16.33■□□□□ 0.21
HMGN4O00479 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HMGN4O00479 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGN4O00479 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HMGN4O00479 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGN4O00479 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGN4O00479 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms