Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 COX5BP2-201ENST00000392354 334 ntBASIC13.48□□□□□ -0.25
COL6A5A8TX70 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL6A5A8TX70 BTBD7P1-201ENST00000447253 1453 ntBASIC13.48□□□□□ -0.25
COL6A5A8TX70 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 AL032819.2-201ENST00000624543 2162 ntBASIC13.48□□□□□ -0.25
COL6A5A8TX70 AC120498.9-201ENST00000339021 3867 ntBASIC13.48□□□□□ -0.25
COL6A5A8TX70 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL6A5A8TX70 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 AC008494.3-201ENST00000606615 944 ntBASIC13.47□□□□□ -0.25
COL6A5A8TX70 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 LINC01006-201ENST00000333319 2292 ntBASIC13.47□□□□□ -0.25
COL6A5A8TX70 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL6A5A8TX70 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL6A5A8TX70 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
COL6A5A8TX70 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
COL6A5A8TX70 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.46□□□□□ -0.25
COL6A5A8TX70 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC13.46□□□□□ -0.25
COL6A5A8TX70 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC13.46□□□□□ -0.25
COL6A5A8TX70 CHCHD2P3-201ENST00000603038 451 ntBASIC13.46□□□□□ -0.25
COL6A5A8TX70 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A5A8TX70 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A5A8TX70 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A5A8TX70 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A5A8TX70 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A5A8TX70 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13.46□□□□□ -0.25
COL6A5A8TX70 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC13.46□□□□□ -0.25
COL6A5A8TX70 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC13.46□□□□□ -0.25
COL6A5A8TX70 AL513480.1-201ENST00000451731 511 ntBASIC13.46□□□□□ -0.25
COL6A5A8TX70 AL583810.1-201ENST00000553344 1045 ntBASIC13.46□□□□□ -0.25
COL6A5A8TX70 AC103810.3-201ENST00000583567 96 ntBASIC13.46□□□□□ -0.25
COL6A5A8TX70 AC133552.6-201ENST00000613406 534 ntBASIC13.46□□□□□ -0.25
COL6A5A8TX70 AL645728.2-201ENST00000641974 660 ntBASIC13.46□□□□□ -0.25
COL6A5A8TX70 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL6A5A8TX70 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
COL6A5A8TX70 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A5A8TX70 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A5A8TX70 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A5A8TX70 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A5A8TX70 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A5A8TX70 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC13.46□□□□□ -0.26
COL6A5A8TX70 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A5A8TX70 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.46□□□□□ -0.26
COL6A5A8TX70 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC13.46□□□□□ -0.26
COL6A5A8TX70 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
COL6A5A8TX70 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A5A8TX70 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.45□□□□□ -0.26
COL6A5A8TX70 STK25P1-201ENST00000585406 838 ntBASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms