Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 AL022326.1-202ENST00000641533 845 ntBASIC18.79■□□□□ 0.6
SIX4Q9UIU6 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 LINC00896-202ENST00000609602 2128 ntBASIC18.79■□□□□ 0.6
SIX4Q9UIU6 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SIX4Q9UIU6 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SIX4Q9UIU6 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 HLA-A-201ENST00000376802 1334 ntBASIC18.77■□□□□ 0.6
SIX4Q9UIU6 AC046185.3-201ENST00000623228 1824 ntBASIC18.77■□□□□ 0.6
SIX4Q9UIU6 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 RPS2P1-201ENST00000434010 821 ntBASIC18.77■□□□□ 0.6
SIX4Q9UIU6 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 AC073648.2-201ENST00000510116 352 ntBASIC18.77■□□□□ 0.6
SIX4Q9UIU6 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SIX4Q9UIU6 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SIX4Q9UIU6 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SIX4Q9UIU6 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
SIX4Q9UIU6 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.76■□□□□ 0.59
SIX4Q9UIU6 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms