Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 FOSL1P1-201ENST00000511041 816 ntBASIC16.33■□□□□ 0.2
UBQLN3Q9H347 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 DUTP2-201ENST00000519164 463 ntBASIC16.33■□□□□ 0.2
UBQLN3Q9H347 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 AC005336.2-201ENST00000593183 939 ntBASIC16.33■□□□□ 0.2
UBQLN3Q9H347 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
UBQLN3Q9H347 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 AL355312.1-201ENST00000407115 2176 ntBASIC16.32■□□□□ 0.2
UBQLN3Q9H347 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 AC099336.1-202ENST00000602961 463 ntBASIC16.32■□□□□ 0.2
UBQLN3Q9H347 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 AL121772.3-201ENST00000610840 674 ntBASIC16.32■□□□□ 0.2
UBQLN3Q9H347 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
UBQLN3Q9H347 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 AC080080.1-201ENST00000625121 2420 ntBASIC16.31■□□□□ 0.2
UBQLN3Q9H347 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 KRT18P31-201ENST00000506277 1292 ntBASIC16.31■□□□□ 0.2
UBQLN3Q9H347 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 AC111152.3-201ENST00000569699 673 ntBASIC16.31■□□□□ 0.2
UBQLN3Q9H347 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.31■□□□□ 0.2
UBQLN3Q9H347 BNIP3P18-201ENST00000593976 575 ntBASIC16.31■□□□□ 0.2
UBQLN3Q9H347 AL732292.2-201ENST00000609649 430 ntBASIC16.31■□□□□ 0.2
UBQLN3Q9H347 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms