Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 SPDYE11-202ENST00000450699 704 ntBASIC17.12■□□□□ 0.33
CFAP54Q96N23 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 SPDYE9P-201ENST00000570642 692 ntBASIC17.12■□□□□ 0.33
CFAP54Q96N23 AL158211.3-201ENST00000607385 239 ntBASIC17.12■□□□□ 0.33
CFAP54Q96N23 SPDYE10P-202ENST00000612005 668 ntBASIC17.12■□□□□ 0.33
CFAP54Q96N23 SPDYE8P-202ENST00000612377 668 ntBASIC17.12■□□□□ 0.33
CFAP54Q96N23 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 MIR149-201ENST00000384879 89 ntBASIC17.12■□□□□ 0.33
CFAP54Q96N23 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 RPS15P9-201ENST00000494093 319 ntBASIC17.12■□□□□ 0.33
CFAP54Q96N23 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 MIR6727-201ENST00000620702 65 ntBASIC17.12■□□□□ 0.33
CFAP54Q96N23 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CFAP54Q96N23 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CFAP54Q96N23 DDX43P3-201ENST00000441064 443 ntBASIC17.11■□□□□ 0.33
CFAP54Q96N23 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CFAP54Q96N23 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CFAP54Q96N23 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CFAP54Q96N23 AC132938.5-201ENST00000624980 1813 ntBASIC17.11■□□□□ 0.33
CFAP54Q96N23 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CFAP54Q96N23 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CFAP54Q96N23 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CFAP54Q96N23 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CFAP54Q96N23 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CFAP54Q96N23 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CFAP54Q96N23 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.11■□□□□ 0.33
CFAP54Q96N23 AC006116.8-202ENST00000587620 1550 ntBASIC17.11■□□□□ 0.33
CFAP54Q96N23 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CFAP54Q96N23 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CFAP54Q96N23 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CFAP54Q96N23 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 AC005332.7-201ENST00000614046 2005 ntBASIC17.1■□□□□ 0.33
CFAP54Q96N23 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 AC022144.1-201ENST00000602255 1580 ntBASIC17.1■□□□□ 0.33
CFAP54Q96N23 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CFAP54Q96N23 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 KRT8P44-201ENST00000441609 1350 ntBASIC17.1■□□□□ 0.33
CFAP54Q96N23 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CFAP54Q96N23 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CFAP54Q96N23 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CFAP54Q96N23 AC069120.2-201ENST00000524091 540 ntBASIC17.1■□□□□ 0.33
CFAP54Q96N23 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC17.1■□□□□ 0.33
CFAP54Q96N23 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CFAP54Q96N23 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CFAP54Q96N23 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CFAP54Q96N23 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 AL355306.1-201ENST00000415580 579 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms