Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 AC097637.2-201ENST00000624096 1997 ntBASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 MRPS18AP1-201ENST00000414458 589 ntBASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMC1BQ8NDV3 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 ACTL9-202ENST00000612068 1252 ntBASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMC1BQ8NDV3 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 MIR1909-201ENST00000411312 80 ntBASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 AC092580.3-201ENST00000430932 139 ntBASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 SPDYE14P-201ENST00000442619 822 ntBASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 AL135744.1-201ENST00000565098 629 ntBASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMC1BQ8NDV3 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 AC140658.5-201ENST00000438532 169 ntBASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 AC092658.1-201ENST00000505836 891 ntBASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 AKAP8P1-201ENST00000434743 1349 ntBASIC20.72■□□□□ 0.91
SMC1BQ8NDV3 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms