Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 PDPK2P-202ENST00000562415 1191 ntBASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 AL353135.1-201ENST00000606729 504 ntBASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 AP002414.1-201ENST00000391405 1147 ntBASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 CYMP-203ENST00000474680 1263 ntBASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 AC004877.2-201ENST00000623941 599 ntBASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.15■□□□□ 0.5
NPAS3Q8IXF0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
NPAS3Q8IXF0 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.14■□□□□ 0.5
NPAS3Q8IXF0 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.14■□□□□ 0.5
NPAS3Q8IXF0 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.14■□□□□ 0.5
NPAS3Q8IXF0 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.14■□□□□ 0.5
NPAS3Q8IXF0 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
NPAS3Q8IXF0 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 CEND1P1-201ENST00000451006 455 ntBASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 AC096734.2-201ENST00000562054 433 ntBASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 OR7E47P-204ENST00000575924 449 ntBASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.14■□□□□ 0.49
NPAS3Q8IXF0 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 LINC00982-205ENST00000420957 435 ntBASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.13■□□□□ 0.49
NPAS3Q8IXF0 KRT19P2-202ENST00000557173 1012 ntBASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms