Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 AC092910.1-201ENST00000482027 1129 ntBASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 SART3-203ENST00000546611 1184 ntBASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SH3RF1Q7Z6J0 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
SH3RF1Q7Z6J0 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.14■□□□□ 0.82
SH3RF1Q7Z6J0 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
SH3RF1Q7Z6J0 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.14■□□□□ 0.82
SH3RF1Q7Z6J0 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.14■□□□□ 0.82
SH3RF1Q7Z6J0 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.82
SH3RF1Q7Z6J0 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SH3RF1Q7Z6J0 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 AL355312.1-201ENST00000407115 2176 ntBASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 KRT18P3-201ENST00000451602 1288 ntBASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 RNA5SP415-201ENST00000517246 115 ntBASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 AC139713.2-201ENST00000641328 2723 ntBASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.13■□□□□ 0.81
SH3RF1Q7Z6J0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms