Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 AC005332.3-201ENST00000589904 676 ntBASIC16.06■□□□□ 0.16
NIPAL3Q6P499 GPR32P1-201ENST00000601788 811 ntBASIC16.06■□□□□ 0.16
NIPAL3Q6P499 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.06■□□□□ 0.16
NIPAL3Q6P499 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NIPAL3Q6P499 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 Z83836.1-201ENST00000624605 1642 ntBASIC16.05■□□□□ 0.16
NIPAL3Q6P499 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 NKILA-202ENST00000614771 2598 ntBASIC16.05■□□□□ 0.16
NIPAL3Q6P499 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 AC124067.4-201ENST00000519691 2379 ntBASIC16.05■□□□□ 0.16
NIPAL3Q6P499 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 RNF126P1-202ENST00000569893 925 ntBASIC16.05■□□□□ 0.16
NIPAL3Q6P499 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NIPAL3Q6P499 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NIPAL3Q6P499 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms