Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 AC133963.1-201ENST00000504166 1679 ntBASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PPP4R4Q6NUP7 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 AL162727.3-201ENST00000635661 2787 ntBASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 AGGF1P2-201ENST00000426656 2106 ntBASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 AC092338.2-201ENST00000568827 1415 ntBASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 AC093010.1-201ENST00000473625 1624 ntBASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PPP4R4Q6NUP7 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 PCDH8P1-201ENST00000428983 2773 ntBASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 AC010653.2-201ENST00000623505 997 ntBASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 AC106886.4-201ENST00000623557 2502 ntBASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.91■□□□□ 0.3
PPP4R4Q6NUP7 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms