Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC099336.1-202ENST00000602961 463 ntBASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 BX276092.7-203ENST00000637198 1536 ntBASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 TSPY19P-201ENST00000418461 509 ntBASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 TSPY18P-201ENST00000441642 509 ntBASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 KRT17P6-201ENST00000453795 1220 ntBASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 AL121772.3-201ENST00000610840 674 ntBASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 LINC01451-201ENST00000623792 534 ntBASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTCHD3Q3KNS1 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 AC091304.2-201ENST00000564639 760 ntBASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 AP005901.3-202ENST00000581653 237 ntBASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 AL353801.3-201ENST00000609898 542 ntBASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTCHD3Q3KNS1 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PTCHD3Q3KNS1 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.21■□□□□ 0.34
PTCHD3Q3KNS1 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 AC004870.1-201ENST00000315132 882 ntBASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 VENTXP7-201ENST00000475503 772 ntBASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 AC011840.4-201ENST00000578471 627 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms