Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
PRKDCP78527 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC12.57□□□□□ -0.4
PRKDCP78527 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
PRKDCP78527 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
PRKDCP78527 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC12.57□□□□□ -0.4
PRKDCP78527 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 AL355994.2-201ENST00000447882 704 ntBASIC12.57□□□□□ -0.4
PRKDCP78527 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC12.57□□□□□ -0.4
PRKDCP78527 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
PRKDCP78527 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
PRKDCP78527 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC12.56□□□□□ -0.4
PRKDCP78527 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC12.56□□□□□ -0.4
PRKDCP78527 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
PRKDCP78527 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 MIR6775-201ENST00000617557 69 ntBASIC12.56□□□□□ -0.4
PRKDCP78527 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC12.56□□□□□ -0.4
PRKDCP78527 SP100-208ENST00000427101 1922 ntTSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC12.56□□□□□ -0.4
PRKDCP78527 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC12.56□□□□□ -0.4
PRKDCP78527 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC12.56□□□□□ -0.4
PRKDCP78527 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC12.56□□□□□ -0.4
PRKDCP78527 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC12.56□□□□□ -0.4
PRKDCP78527 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
PRKDCP78527 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
PRKDCP78527 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 AC107918.2-201ENST00000530817 355 ntBASIC12.56□□□□□ -0.4
PRKDCP78527 WASH4P-201ENST00000564273 1246 ntBASIC12.56□□□□□ -0.4
PRKDCP78527 TMEM261P1-201ENST00000604899 340 ntBASIC12.56□□□□□ -0.4
PRKDCP78527 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
PRKDCP78527 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
PRKDCP78527 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PRKDCP78527 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
PRKDCP78527 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC12.55□□□□□ -0.4
PRKDCP78527 AL512638.1-201ENST00000457493 794 ntBASIC12.55□□□□□ -0.4
PRKDCP78527 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC12.55□□□□□ -0.4
PRKDCP78527 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
PRKDCP78527 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
PRKDCP78527 AL590560.3-201ENST00000623350 461 ntBASIC12.55□□□□□ -0.4
PRKDCP78527 FLYWCH1P1-201ENST00000460917 1874 ntBASIC12.55□□□□□ -0.4
PRKDCP78527 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PRKDCP78527 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC12.55□□□□□ -0.4
PRKDCP78527 HARS-201ENST00000307633 1780 ntTSL 2 BASIC12.55□□□□□ -0.4
PRKDCP78527 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PRKDCP78527 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.55□□□□□ -0.4
PRKDCP78527 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC12.55□□□□□ -0.4
PRKDCP78527 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC12.55□□□□□ -0.4
PRKDCP78527 AL583810.1-201ENST00000553344 1045 ntBASIC12.55□□□□□ -0.4
PRKDCP78527 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PRKDCP78527 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
PRKDCP78527 ADM-207ENST00000530439 1839 ntTSL 2 BASIC12.55□□□□□ -0.4
PRKDCP78527 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
PRKDCP78527 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC12.55□□□□□ -0.4
PRKDCP78527 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PRKDCP78527 ACTBP11-201ENST00000436287 1126 ntBASIC12.55□□□□□ -0.4
PRKDCP78527 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC12.55□□□□□ -0.4
PRKDCP78527 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC12.55□□□□□ -0.4
PRKDCP78527 MIR6727-201ENST00000620702 65 ntBASIC12.55□□□□□ -0.4
PRKDCP78527 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
PRKDCP78527 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
PRKDCP78527 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PRKDCP78527 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms