Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.31■□□□□ 0.2
RNF4P78317 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.31■□□□□ 0.2
RNF4P78317 AC109462.3-201ENST00000573934 613 ntBASIC16.31■□□□□ 0.2
RNF4P78317 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
RNF4P78317 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.31■□□□□ 0.2
RNF4P78317 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF4P78317 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 AC104692.2-201ENST00000603054 253 ntBASIC16.31■□□□□ 0.2
RNF4P78317 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF4P78317 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RNF4P78317 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF4P78317 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.3■□□□□ 0.2
RNF4P78317 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 REXO1L11P-201ENST00000620964 1927 ntBASIC16.3■□□□□ 0.2
RNF4P78317 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.3■□□□□ 0.2
RNF4P78317 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 FGFR3P6-201ENST00000457012 610 ntBASIC16.3■□□□□ 0.2
RNF4P78317 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 AC002558.1-201ENST00000488906 803 ntBASIC16.3■□□□□ 0.2
RNF4P78317 IGHV3-52-201ENST00000519770 353 ntBASIC16.3■□□□□ 0.2
RNF4P78317 AL160237.2-201ENST00000556165 472 ntBASIC16.3■□□□□ 0.2
RNF4P78317 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF4P78317 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF4P78317 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF4P78317 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RNF4P78317 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF4P78317 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF4P78317 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.29■□□□□ 0.2
RNF4P78317 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RNF4P78317 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF4P78317 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
RNF4P78317 AC005104.2-201ENST00000427818 678 ntBASIC16.29■□□□□ 0.2
RNF4P78317 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.29■□□□□ 0.2
RNF4P78317 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RNF4P78317 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RNF4P78317 AC073592.5-201ENST00000624854 528 ntBASIC16.29■□□□□ 0.2
RNF4P78317 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.29■□□□□ 0.2
RNF4P78317 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF4P78317 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF4P78317 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms