Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
HOXA1P49639 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.67□□□□□ -0.06
HOXA1P49639 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.67□□□□□ -0.06
HOXA1P49639 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HOXA1P49639 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXA1P49639 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
HOXA1P49639 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 AC009102.3-201ENST00000623118 1491 ntBASIC14.66□□□□□ -0.06
HOXA1P49639 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC14.66□□□□□ -0.06
HOXA1P49639 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 FAM197Y1-201ENST00000421178 764 ntBASIC14.66□□□□□ -0.06
HOXA1P49639 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 RPPH1-201ENST00000516869 333 ntBASIC14.66□□□□□ -0.06
HOXA1P49639 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC14.66□□□□□ -0.06
HOXA1P49639 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXA1P49639 CYGB-204ENST00000589342 815 ntTSL 3 BASIC14.66□□□□□ -0.06
HOXA1P49639 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HOXA1P49639 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC14.66□□□□□ -0.06
HOXA1P49639 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXA1P49639 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXA1P49639 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HOXA1P49639 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
HOXA1P49639 AC096733.2-201ENST00000609937 1394 ntBASIC14.65□□□□□ -0.06
HOXA1P49639 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC14.65□□□□□ -0.06
HOXA1P49639 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC14.65□□□□□ -0.06
HOXA1P49639 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC14.65□□□□□ -0.06
HOXA1P49639 MIR3180-5-201ENST00000583743 153 ntBASIC14.65□□□□□ -0.06
HOXA1P49639 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 DGCR10-201ENST00000609839 495 ntBASIC14.65□□□□□ -0.06
HOXA1P49639 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HOXA1P49639 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC14.65□□□□□ -0.06
HOXA1P49639 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.65□□□□□ -0.06
HOXA1P49639 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HOXA1P49639 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HOXA1P49639 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
HOXA1P49639 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC14.65□□□□□ -0.06
HOXA1P49639 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
HOXA1P49639 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXA1P49639 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXA1P49639 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HOXA1P49639 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC14.64□□□□□ -0.07
HOXA1P49639 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HOXA1P49639 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC14.64□□□□□ -0.07
HOXA1P49639 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HOXA1P49639 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXA1P49639 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXA1P49639 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms