Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
XRCC1P18887 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
XRCC1P18887 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
XRCC1P18887 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
XRCC1P18887 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
XRCC1P18887 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
XRCC1P18887 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.58■□□□□ 0.41
XRCC1P18887 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
XRCC1P18887 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
XRCC1P18887 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.41
XRCC1P18887 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.58■□□□□ 0.41
XRCC1P18887 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.58■□□□□ 0.41
XRCC1P18887 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
XRCC1P18887 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
XRCC1P18887 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
XRCC1P18887 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.58■□□□□ 0.4
XRCC1P18887 KRT18P65-201ENST00000439811 1286 ntBASIC17.58■□□□□ 0.4
XRCC1P18887 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.58■□□□□ 0.4
XRCC1P18887 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.58■□□□□ 0.4
XRCC1P18887 AP005901.3-202ENST00000581653 237 ntBASIC17.58■□□□□ 0.4
XRCC1P18887 AL121772.3-201ENST00000610840 674 ntBASIC17.58■□□□□ 0.4
XRCC1P18887 AL691432.3-201ENST00000621860 400 ntBASIC17.58■□□□□ 0.4
XRCC1P18887 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.58■□□□□ 0.4
XRCC1P18887 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.58■□□□□ 0.4
XRCC1P18887 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 AL096828.2-201ENST00000567259 1965 ntBASIC17.58■□□□□ 0.4
XRCC1P18887 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.58■□□□□ 0.4
XRCC1P18887 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.58■□□□□ 0.4
XRCC1P18887 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
XRCC1P18887 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.58■□□□□ 0.4
XRCC1P18887 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
XRCC1P18887 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.57■□□□□ 0.4
XRCC1P18887 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
XRCC1P18887 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.57■□□□□ 0.4
XRCC1P18887 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.57■□□□□ 0.4
XRCC1P18887 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.57■□□□□ 0.4
XRCC1P18887 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
XRCC1P18887 TPM4P1-201ENST00000436100 807 ntBASIC17.57■□□□□ 0.4
XRCC1P18887 AC091607.1-201ENST00000490318 1060 ntBASIC17.57■□□□□ 0.4
XRCC1P18887 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.57■□□□□ 0.4
XRCC1P18887 FOSL1P1-201ENST00000511041 816 ntBASIC17.57■□□□□ 0.4
XRCC1P18887 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.57■□□□□ 0.4
XRCC1P18887 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.57■□□□□ 0.4
XRCC1P18887 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 BCL2-203ENST00000589955 5011 ntBASIC17.57■□□□□ 0.4
XRCC1P18887 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.57■□□□□ 0.4
XRCC1P18887 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
XRCC1P18887 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
XRCC1P18887 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
XRCC1P18887 NSUN5P1-202ENST00000421140 1535 ntBASIC17.57■□□□□ 0.4
XRCC1P18887 NSUN5P2-203ENST00000457352 1529 ntBASIC17.57■□□□□ 0.4
XRCC1P18887 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
XRCC1P18887 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
XRCC1P18887 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
XRCC1P18887 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
XRCC1P18887 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
XRCC1P18887 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
XRCC1P18887 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.56■□□□□ 0.4
XRCC1P18887 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
XRCC1P18887 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
XRCC1P18887 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.56■□□□□ 0.4
XRCC1P18887 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms